Prupe.5G032100_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
3667449 .. 3668372
924 bp
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UTR
Exon/CDS
Intron
Prupe.5G032100.1

Sequence Viewer

Length: 255 bp
TCGGACCCATATGACTGGCAATTTGCAATCACAGGCCCTAATGGAACTGACTTCGAGGCTGGGATTTATCATGGTCGGATCCAGTTTTTGGGGAAATACCCACACAACATAAGCGTCCTATGTTCACGTTGTTGTCGGAAATATCATATGTCGTTGCTTTTTAAGGAAAATGGTCGCTTCAAAACCCAAACCGAGATCAGTTTCAGCGATATTTTTCGGAAGGAGCAACACGGTCGTACATTTCATTCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.9

Weight (kDa)

8.91

Isoelectric Point (pI)

23.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024550)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 88
AclWI GGATC 2 cut(s) 73, 86
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 181
AlwI GGATC 2 cut(s) 73, 86
AoxI GGCC 1 cut(s) 34
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 4, 35
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 35
BmiI GGNNCC 2 cut(s) 6, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 20, 82
BseLI CCNNNNNNNGG 1 cut(s) 88
BseNI ACTGG 2 cut(s) 20, 82
BseYI CCCAGC 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 88
BsnI GGCC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 78, 195
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 6, 80
BspPI GGATC 2 cut(s) 73, 86
BsrI ACTGG 2 cut(s) 20, 82
BssMI GATC 2 cut(s) 78, 195
Bst4CI ACNGT 1 cut(s) 233
BstKTI GATC 2 cut(s) 81, 198
BstMBI GATC 2 cut(s) 78, 195
BstMCI CGRYCG 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 15
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 4, 35
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 237
CviAII CATG 1 cut(s) 71
CviJI RGCY 2 cut(s) 36, 59
CviKI_1 RGCY 2 cut(s) 36, 59
CviQI GTAC 1 cut(s) 237
DpnI GATC 2 cut(s) 80, 197
DpnII GATC 2 cut(s) 78, 195
Eco47I GGWCC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 35
FaeI CATG 1 cut(s) 74
FaiI YATR 7 cut(s) 10, 12, 72, 110, 121, 147, 149
FatI CATG 1 cut(s) 70
FauNDI CATATG 2 cut(s) 10, 147
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 36
HgaI GACGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 5 cut(s) 4, 78, 138, 219, 254
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 2 cut(s) 78, 195
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 18, 45, 95
MaeII ACGT 1 cut(s) 127
MalI GATC 2 cut(s) 80, 197
MboI GATC 2 cut(s) 78, 195
MflI RGATCY 1 cut(s) 78
MluCI AATT 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 56, 116
MnlI CCTC 1 cut(s) 49
MseI TTAA 1 cut(s) 162
NdeI CATATG 2 cut(s) 10, 147
NdeII GATC 2 cut(s) 78, 195
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 2 cut(s) 6, 80
PflMI CCANNNNNTGG 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 6, 80
PspPI GGNCC 2 cut(s) 4, 35
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 2 cut(s) 78, 195
Sau96I GGNCC 2 cut(s) 4, 35
SetI ASST 1 cut(s) 130
SgeI CNNG 9 cut(s) 28, 45, 67, 72, 83, 94, 138, 205, 242
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 20
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 20
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.