Prupe.5G033600_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0024550
Physical Location & Seq
Forward (+)
3849513 .. 3851544
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G033600.1

Sequence Viewer

Length: 735 bp
ATGGGATCGTTTAAGAGTAAGGTGGAGGAGGAGGAGGAGTACAACTCGTTCAACGAGTTCACGATTAATAAACTATTCTTGTCGAATCTCATTCACACGGAGTTGGAGGAGATGCAATCCAATCCCTCTGCCGATTTCAAGTGCCTCGCGCTTGAGTCGAACCCACAGGACTGGCAATTTGCAGTCAGAGGCCCTAATGGAACTGAATTTGAGGGTGGAATTTATCATGGCCAGATCAAGATTCCGGAGGAATACCCACACAAGCCTCCTATAATCACGTTGTTGTCGGAAAATGGTCGCTTCAAAACCCAAACCGAGATCGATTATTTCAGCAATTTTTTATGGAGGCCACGCCAAAAAGTGCGAGATACTTTACTTAGACTTATTGAGTTATTGCCCACCTACCCAGATGGTGCGTTGGGTTCAGTAGAATACGATAAGGAAGAAAGGCGTGTCCTGGCAATCAAATCTCGTTTAGCAGCCCCAATATATGGCACTGATGAACGTCAGAAGTTAATTAATGAGATTCATAAATATATGCTAAGCAAGACACCCCCAGTTCCTTCAAACGGGGGAGGGGACCAAAATGATCGAGACAGAAGAAAGCAGGGCATAGTTACCCAAAAAAGAAAAAGAACGCCGGACAAGATTTTATTTTATAAGAATACAATTAATGCTGACAACTGCAAGCGGGTAGGATTTTTCGATTTTGAGAAGAAGCTCAGAAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04141 ko05012 map04120 map04141 map05012
Pfam Domains
Protein Families
UQ_con

Protein Analysis

245

Amino Acids

28.36

Weight (kDa)

8.37

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024550)

Species Orthologous Gene IDs
prunus_persica Prupe.5G032100_v2.0.a1 Prupe.5G033500_v2.0.a1 Prupe.5G033600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 491
AccII CGCG 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 1 cut(s) 691
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 2 cut(s) 206, 219
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 491, 569
AgsI TTSAA 4 cut(s) 52, 139, 304, 567
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 1 cut(s) 721
AluI AGCT 1 cut(s) 721
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 3 cut(s) 190, 229, 347
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 2 cut(s) 206, 219
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AseI ATTAAT 3 cut(s) 66, 519, 672
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 191, 580
AvaII GGWCC 1 cut(s) 580
BalI TGGCCA 1 cut(s) 231
BbvI GCAGC 1 cut(s) 491
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 588
BisI GCNGC 1 cut(s) 480
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 1 cut(s) 481
Bme1390I CCNGG 1 cut(s) 458
Bme18I GGWCC 1 cut(s) 580
BmgT120I GGNCC 2 cut(s) 191, 580
BmiI GGNNCC 1 cut(s) 581
BmrFI CCNGG 1 cut(s) 458
BmrI ACTGGG 1 cut(s) 551
BmsI GCATC 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 551
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu1102I GCTNAGC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 321
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 569
Bse1I ACTGG 2 cut(s) 176, 557
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 458
BseCI ATCGAT 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 491, 569
BseNI ACTGG 2 cut(s) 176, 557
BseRI GAGGAG 5 cut(s) 41, 44, 47, 50, 122
BseXI GCAGC 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 192, 231, 349
BshVI ATCGAT 1 cut(s) 321
BsiSI CCGG 2 cut(s) 245, 641
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 491, 569
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 3 cut(s) 192, 231, 349
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 5, 234, 318, 589
Bsp1720I GCTNAGC 1 cut(s) 542
BspACI CCGC 1 cut(s) 691
BspANI GGCC 3 cut(s) 192, 231, 349
BspCNI CTCAG 1 cut(s) 735
BspDI ATCGAT 1 cut(s) 321
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 581
BspPI GGATC 1 cut(s) 13
BsrI ACTGG 2 cut(s) 176, 557
BssMI GATC 4 cut(s) 5, 234, 318, 589
Bst2UI CCWGG 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 689
BstDEI CTNAG 3 cut(s) 377, 542, 722
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 4 cut(s) 8, 237, 321, 592
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 4 cut(s) 5, 234, 318, 589
BstNI CCWGG 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 456
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 491
BstXI CCANNNNNNTGG 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 3 cut(s) 192, 231, 349
BsuTUI ATCGAT 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 1 cut(s) 689
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 191, 580
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 227
CviJI RGCY 7 cut(s) 192, 231, 265, 349, 482, 721, 729
CviKI_1 RGCY 7 cut(s) 192, 231, 265, 349, 482, 721, 729
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 3 cut(s) 377, 542, 722
DpnI GATC 4 cut(s) 7, 236, 320, 591
DpnII GATC 4 cut(s) 5, 234, 318, 589
EaeI YGGCCR 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 456
FaeI CATG 1 cut(s) 230
FaqI GGGAC 1 cut(s) 593
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 684
Fnu4HI GCNGC 1 cut(s) 480
Fsp4HI GCNGC 1 cut(s) 480
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 480
HaeIII GGCC 3 cut(s) 192, 231, 349
HapII CCGG 2 cut(s) 245, 641
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 4 cut(s) 85, 155, 241, 526
HpaII CCGG 2 cut(s) 245, 641
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 4 cut(s) 188, 289, 510, 725
Hpy188III TCNNGA 4 cut(s) 61, 238, 245, 593
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 573
HpyCH4IV ACGT 2 cut(s) 278, 505
HpyCH4V TGCA 3 cut(s) 115, 182, 687
HpyF3I CTNAG 3 cut(s) 377, 542, 722
HpySE526I ACGT 2 cut(s) 278, 505
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 5, 234, 318, 589
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 1 cut(s) 102
MaeII ACGT 2 cut(s) 278, 505
MaeIII GTNAC 1 cut(s) 616
MalI GATC 4 cut(s) 7, 236, 320, 591
MboI GATC 4 cut(s) 5, 234, 318, 589
MboII GAAGA 3 cut(s) 455, 612, 727
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 6 cut(s) 176, 206, 219, 334, 516, 669
MluNI TGGCCA 1 cut(s) 231
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 84, 267
Mox20I TGGCCA 1 cut(s) 231
MroI TCCGGA 1 cut(s) 244
MscI TGGCCA 1 cut(s) 231
MseI TTAA 5 cut(s) 12, 66, 515, 519, 672
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 2 cut(s) 245, 641
MspR9I CCNGG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 458
MvnI CGCG 1 cut(s) 149
NdeII GATC 4 cut(s) 5, 234, 318, 589
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 581
PacI TTAATTAA 1 cut(s) 519
PfeI GAWTC 3 cut(s) 85, 241, 526
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PshBI ATTAAT 3 cut(s) 66, 519, 672
PsiI TTATAA 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 456
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 581
PspPI GGNCC 2 cut(s) 191, 580
PsrI GAACNNNNNNTAC 2 cut(s) 32, 64
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 5 cut(s) 12, 66, 515, 519, 672
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 4 cut(s) 5, 234, 318, 589
Sau96I GGNCC 2 cut(s) 191, 580
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 458
SetI ASST 5 cut(s) 24, 281, 404, 508, 723
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 580
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 6 cut(s) 176, 206, 219, 334, 516, 669
SsiI CCGC 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 456
TaiI ACGT 2 cut(s) 281, 508
TaqI TCGA 5 cut(s) 83, 158, 321, 592, 705
TasI AATT 6 cut(s) 176, 206, 219, 334, 516, 669
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 3 cut(s) 85, 241, 526
Tru1I TTAA 5 cut(s) 12, 66, 515, 519, 672
Tru9I TTAA 5 cut(s) 12, 66, 515, 519, 672
TscAI CASTG 1 cut(s) 502
TseI GCWGC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 516, 518
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 502
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 580
VspI ATTAAT 3 cut(s) 66, 519, 672
XapI RAATTY 2 cut(s) 206, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.