Prupe.5G032700_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0022489
Physical Location & Seq
Reverse (-)
3725602 .. 3726746
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G032700.1

Sequence Viewer

Length: 597 bp
ATGACCGGTCCGGTTCGGTCCGGTCCGGTACGGAGAGATGTAAAACCGGAACCGGAACCGGTTGGAACCGGTTCGGCAAACAAAGATGGTGGTGCCACTGCCATAATAAGAGAGCTGGGGAAACTAGTTCAGTTGAGAAGGTTAGGCATTGTTCTGGGAAAAGAAGATTTAAAGGTTCTTTGTTCATCCATTGAAAAGCTCAGCAAACCTTGTGCATTGTCCATAACTTCAGTAGAAGAGGATGGGATCATTGATTTGCAGCACCTTTCTTCTTCCCCTCTCCTGCTTCAGAGGCTGTACTTACAAGGACGATTGGAGACATTACCTCACTGTATACCTTCTCTGCATAGCATTGTCATGTTATGTTTGAAGTGGAGTAGGTTAAAGGATGATCCACTTGTATTCCTTCAGTATTTGCCCAATCTAGTACATCGAATCCGAAACAATACTGACATCACAAAAGCAAACAACTCTCAGGAATTGCAGTTGATGGGAATTCTAAATACTAAACTGCGTTTAGCAATTTTTCTCAACTGGCAGCCACTTGATACTAGACTGAGCATCCAGATGCCTTCATATCAGCAGACAGTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

199

Amino Acids

22.08

Weight (kDa)

9.3

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022489)

Species Orthologous Gene IDs
prunus_persica Prupe.5G032700_v2.0.a1
rosa_samantha Rh2AG310000 Rh2CG296900 Rh2CG301900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 334
AclWI GGATC 2 cut(s) 254, 386
AcsI RAATTY 1 cut(s) 495
AcuI CTGAAG 3 cut(s) 213, 272, 392
AfaI GTAC 3 cut(s) 30, 299, 429
AgeI ACCGGT 3 cut(s) 5, 58, 68
AgsI TTSAA 2 cut(s) 194, 370
AhlI ACTAGT 1 cut(s) 124
AluBI AGCT 2 cut(s) 115, 199
AluI AGCT 2 cut(s) 115, 199
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 2 cut(s) 254, 386
AlwNI CAGNNNCTG 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 259, 538
ApoI RAATTY 1 cut(s) 495
AsiGI ACCGGT 3 cut(s) 5, 58, 68
Asp700I GAANNNNTTC 1 cut(s) 70
AspS9I GGNCC 3 cut(s) 8, 18, 23
AvaII GGWCC 3 cut(s) 8, 18, 23
BanI GGYRCC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 271, 550
BccI CCATC 3 cut(s) 80, 236, 484
BcoDI GTCTC 1 cut(s) 311
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 3 cut(s) 125, 425, 552
BisI GCNGC 2 cut(s) 260, 539
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 2 cut(s) 261, 540
Bme18I GGWCC 3 cut(s) 8, 18, 23
BmgT120I GGNCC 3 cut(s) 8, 18, 23
BmiI GGNNCC 4 cut(s) 51, 57, 67, 94
BmsI GCATC 2 cut(s) 558, 570
Bpu1102I GCTNAGC 1 cut(s) 200
BsaWI WCCGGW 8 cut(s) 5, 10, 20, 25, 46, 52, 58, 68
Bse118I RCCGGY 3 cut(s) 5, 58, 68
Bse1I ACTGG 1 cut(s) 539
BseGI GGATG 4 cut(s) 185, 247, 394, 561
BseMII CTCAG 3 cut(s) 214, 488, 548
BseNI ACTGG 1 cut(s) 539
BseXI GCAGC 2 cut(s) 271, 550
BseYI CCCAGC 1 cut(s) 115
BshNI GGYRCC 1 cut(s) 92
BshTI ACCGGT 3 cut(s) 5, 58, 68
BsiSI CCGG 8 cut(s) 6, 11, 21, 26, 47, 53, 59, 69
BsmAI GTCTC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 246, 391
Bsp1720I GCTNAGC 1 cut(s) 200
BspCNI CTCAG 3 cut(s) 213, 487, 549
BspLI GGNNCC 4 cut(s) 51, 57, 67, 94
BspPI GGATC 2 cut(s) 254, 386
BspT107I GGYRCC 1 cut(s) 92
BsrFI RCCGGY 3 cut(s) 5, 58, 68
BsrI ACTGG 1 cut(s) 539
BssAI RCCGGY 3 cut(s) 5, 58, 68
BssMI GATC 2 cut(s) 246, 391
BssNAI GTATAC 1 cut(s) 335
Bst1107I GTATAC 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 332, 589
Bst6I CTCTTC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 200, 474, 557
BstF5I GGATG 4 cut(s) 185, 247, 394, 561
BstKTI GATC 2 cut(s) 249, 394
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 2 cut(s) 246, 391
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 271, 550
BstZ17I GTATAC 1 cut(s) 335
BtsCI GGATG 4 cut(s) 185, 247, 394, 561
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 328
CaiI CAGNNNCTG 1 cut(s) 295
Cfr10I RCCGGY 3 cut(s) 5, 58, 68
Cfr13I GGNCC 3 cut(s) 8, 18, 23
CpoI CGGWCCG 3 cut(s) 8, 18, 23
Csp6I GTAC 3 cut(s) 29, 298, 428
CspAI ACCGGT 3 cut(s) 5, 58, 68
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CspI CGGWCCG 3 cut(s) 8, 18, 23
CviAII CATG 1 cut(s) 358
CviJI RGCY 4 cut(s) 115, 199, 295, 541
CviKI_1 RGCY 4 cut(s) 115, 199, 295, 541
CviQI GTAC 3 cut(s) 29, 298, 428
DdeI CTNAG 3 cut(s) 200, 474, 557
DpnI GATC 2 cut(s) 248, 393
DpnII GATC 2 cut(s) 246, 391
DraI TTTAAA 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 8, 18, 23
Eco57I CTGAAG 3 cut(s) 213, 272, 392
EcoRI GAATTC 1 cut(s) 495
FaeI CATG 1 cut(s) 361
FaiI YATR 7 cut(s) 104, 224, 335, 348, 359, 364, 577
FatI CATG 1 cut(s) 357
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 260, 539
FokI GGATG 4 cut(s) 172, 254, 401, 548
Fsp4HI GCNGC 2 cut(s) 260, 539
FspBI CTAG 3 cut(s) 125, 425, 552
GluI GCNGC 2 cut(s) 260, 539
GsaI CCCAGC 1 cut(s) 119
HapII CCGG 8 cut(s) 6, 11, 21, 26, 47, 53, 59, 69
Hin1II CATG 1 cut(s) 361
HinfI GANTC 1 cut(s) 435
HpaII CCGG 8 cut(s) 6, 11, 21, 26, 47, 53, 59, 69
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 2 cut(s) 291, 440
Hpy188III TCNNGA 2 cut(s) 476, 565
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 4 cut(s) 132, 348, 416, 582
HpyCH4III ACNGT 2 cut(s) 332, 589
HpyCH4V TGCA 4 cut(s) 215, 259, 346, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 3 cut(s) 200, 474, 557
Hsp92II CATG 1 cut(s) 361
Kzo9I GATC 2 cut(s) 246, 391
Lsp1109I GCAGC 2 cut(s) 271, 550
LweI GCATC 2 cut(s) 558, 570
MaeI CTAG 3 cut(s) 125, 425, 552
MalI GATC 2 cut(s) 248, 393
MboI GATC 2 cut(s) 246, 391
MboII GAAGA 4 cut(s) 176, 248, 261, 264
MluCI AATT 3 cut(s) 479, 495, 522
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 4 cut(s) 232, 285, 288, 336
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 2 cut(s) 170, 383
MslI CAYNNNNRTG 2 cut(s) 356, 566
MspI CCGG 8 cut(s) 6, 11, 21, 26, 47, 53, 59, 69
MwoI GCNNNNNNNGC 1 cut(s) 292
NdeII GATC 2 cut(s) 246, 391
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 4 cut(s) 51, 57, 67, 94
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 435
PinAI ACCGGT 3 cut(s) 5, 58, 68
PkrI GCNGC 2 cut(s) 261, 540
PspFI CCCAGC 1 cut(s) 115
PspN4I GGNNCC 4 cut(s) 51, 57, 67, 94
PspPI GGNCC 3 cut(s) 8, 18, 23
PstNI CAGNNNCTG 1 cut(s) 295
RsaI GTAC 3 cut(s) 30, 299, 429
RsaNI GTAC 3 cut(s) 29, 298, 428
RseI CAYNNNNRTG 2 cut(s) 356, 566
Rsr2I CGGWCCG 3 cut(s) 8, 18, 23
RsrII CGGWCCG 3 cut(s) 8, 18, 23
SaqAI TTAA 2 cut(s) 170, 383
SatI GCNGC 2 cut(s) 260, 539
Sau3AI GATC 2 cut(s) 246, 391
Sau96I GGNCC 3 cut(s) 8, 18, 23
SetI ASST 9 cut(s) 117, 143, 177, 201, 211, 267, 328, 340, 383
SfaNI GCATC 2 cut(s) 558, 570
SinI GGWCC 3 cut(s) 8, 18, 23
SmiMI CAYNNNNRTG 2 cut(s) 356, 566
SpeI ACTAGT 1 cut(s) 124
Sse9I AATT 3 cut(s) 479, 495, 522
SspMI CTAG 3 cut(s) 125, 425, 552
TaaI ACNGT 2 cut(s) 332, 589
TaqI TCGA 1 cut(s) 433
TaqII GACCGA 1 cut(s) 6
TasI AATT 3 cut(s) 479, 495, 522
TatI WGTACW 2 cut(s) 297, 427
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 2 cut(s) 170, 383
Tru9I TTAA 2 cut(s) 170, 383
TscAI CASTG 2 cut(s) 103, 335
TseI GCWGC 2 cut(s) 259, 538
TspDTI ATGAA 2 cut(s) 174, 564
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 2 cut(s) 103, 335
VpaK11BI GGWCC 3 cut(s) 8, 18, 23
XapI RAATTY 1 cut(s) 495
XmiI GTMKAC 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 3 cut(s) 125, 425, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.