Rh2AG310000

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0022489
Physical Location & Seq
Forward (+)
39456856 .. 39457188
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG310000.1

Sequence Viewer

Length: 333 bp
ATGAGGAAAAAAGATGGCAAGGCTCTTTCTTCATCCATTGAAAAGTTGTCCAAACTTTATGCATTGTCCATAACTTCAGTGGAAGAAGACGAGATCATTGATTTGCAGCACCTGCATTCTCCTCCTCTATTGCTTCAGCATTTGTACTTGCGAGGCAGACTGGAAGTATTACCTCACTGGATACCTTCTCTCCATAGCCTCGTCAAGTTGTATTTGAAATGGAGCAGGTTAAGGGATGATCCACTTGCATTCCTTCAGTATTTGCCCAATCTAGTACATCTTGAGTTGTGTCAGGTTTTTGAAGGAGACACACTATGTTTTGGAGCCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

110

Amino Acids

12.66

Weight (kDa)

6.58

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 6 - 102 2.6e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022489)

Species Orthologous Gene IDs
prunus_persica Prupe.5G032700_v2.0.a1
rosa_samantha Rh2AG310000 Rh2CG296900 Rh2CG301900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 120
Acc36I ACCTGC 2 cut(s) 120, 216
AclWI GGATC 1 cut(s) 233
AcuI CTGAAG 3 cut(s) 60, 119, 239
AfaI GTAC 2 cut(s) 146, 276
AgsI TTSAA 3 cut(s) 41, 217, 302
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 8
BciVI GTATCC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 272
BfuAI ACCTGC 2 cut(s) 120, 216
BfuI GTATCC 1 cut(s) 174
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 165, 182
BseGI GGATG 2 cut(s) 32, 241
BseNI ACTGG 2 cut(s) 165, 182
BseRI GAGGAG 2 cut(s) 111, 114
BseXI GCAGC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 300
BsmI GAATGC 2 cut(s) 115, 248
Bsp143I GATC 2 cut(s) 93, 238
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 2 cut(s) 120, 216
BspPI GGATC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 165, 182
BssAI RCCGGY 1 cut(s) 326
BssMI GATC 2 cut(s) 93, 238
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 328
BstF5I GGATG 2 cut(s) 32, 241
BstKTI GATC 2 cut(s) 96, 241
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 2 cut(s) 93, 238
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 93
BsuI GTATCC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 32, 241
BtsIMutI CAGTG 2 cut(s) 84, 175
BveI ACCTGC 2 cut(s) 120, 216
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 326
Csp6I GTAC 2 cut(s) 145, 275
CviJI RGCY 4 cut(s) 23, 198, 326, 330
CviKI_1 RGCY 4 cut(s) 23, 198, 326, 330
CviQI GTAC 2 cut(s) 145, 275
DpnI GATC 2 cut(s) 95, 240
DpnII GATC 2 cut(s) 93, 238
Eco57I CTGAAG 3 cut(s) 60, 119, 239
EcoT22I ATGCAT 1 cut(s) 64
FaiI YATR 4 cut(s) 60, 71, 195, 316
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 2 cut(s) 19, 248
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 107
HapII CCGG 1 cut(s) 327
HpaII CCGG 1 cut(s) 327
Hpy188III TCNNGA 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 195, 263, 296
HpyCH4V TGCA 4 cut(s) 62, 106, 115, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 93, 238
LmnI GCTCC 2 cut(s) 222, 323
LpnPI CCDG 5 cut(s) 125, 146, 163, 211, 278
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 272
MalI GATC 2 cut(s) 95, 240
MboI GATC 2 cut(s) 93, 238
MboII GAAGA 3 cut(s) 21, 95, 98
MnlI CCTC 5 cut(s) 132, 135, 146, 183, 209
Mph1103I ATGCAT 1 cut(s) 64
MroNI GCCGGC 1 cut(s) 326
MseI TTAA 1 cut(s) 230
MspI CCGG 1 cut(s) 327
Mva1269I GAATGC 2 cut(s) 115, 248
MwoI GCNNNNNNNGC 1 cut(s) 112
NaeI GCCGGC 1 cut(s) 328
NdeII GATC 2 cut(s) 93, 238
NgoMIV GCCGGC 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 120
PctI GAATGC 2 cut(s) 115, 248
PdiI GCCGGC 1 cut(s) 328
PkrI GCNGC 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 112
RsaI GTAC 2 cut(s) 146, 276
RsaNI GTAC 2 cut(s) 145, 275
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 93, 238
SetI ASST 5 cut(s) 114, 175, 187, 230, 297
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SspMI CTAG 1 cut(s) 272
TatI WGTACW 2 cut(s) 144, 274
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 2 cut(s) 84, 182
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 2 cut(s) 84, 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.