Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0024516

Physical Location & Seq

Genomic Coordinates Reverse (-)

4054654 .. 4056534

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G035700.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCACCTACGAAGCATTTCACCCAAGAACAGCACATCATCCGAAGCTAAAGAGATAGCCGAGATGATTAAAACACTCGAAAAACAAAGAGATAGGGCTATAAAAAATTTGAAAAATTTAGAACAACTATCTGTAGCTAGCATCAAAGACATGCAAGAAATCATACAAGTCAAAACTAACGATCAATGGAAAGGAAATCAAATTTCCATTGATCCGTACTCTGTAGATCCTTCATCAACAGAGTACAATGAGATTGAAAAAATTGCTGAAGAGCATGACTTGAAAATCATGCCGTACGACATCGACTACGAACTTAAGCAAAACAAAAAAGAAACTATATCTGATATTATTGATCTGCCAAATAAACCGAAAGAAAGACCAACACTTTTGCAGCAGGAGCCTTTAGAGAATGGGTCAACCATCACATATGTTCCTACTAGAAAAGGAACATTGGGCATTGCAAACTATCTCTGCAGGTGTGGCGTGAAGGCTGCTGCCTATAATGTAGCAGTATGCCATGGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

176

Amino Acids

19.85

Weight (kDa)

5.98

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024516)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G155400_v2.0.a1 Prupe.5G035700_v2.0.a1 Prupe.5G035700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	526
AarI	CACCTGC	1 cut(s)	465
Acc36I	ACCTGC	1 cut(s)	465
AclWI	GGATC	2 cut(s)	206, 221
AcsI	RAATTY	3 cut(s)	106, 115, 201
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	3 cut(s)	218, 245, 296
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	112, 257, 283
AluBI	AGCT	2 cut(s)	47, 137
AluI	AGCT	2 cut(s)	47, 137
AlwI	GGATC	2 cut(s)	206, 221
ApeKI	GCWGC	3 cut(s)	391, 491, 494
ApoI	RAATTY	3 cut(s)	106, 115, 201
Asp700I	GAANNNNTTC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	12
AsuNHI	GCTAGC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	403, 478, 481
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	138, 438
BfmI	CTRYAG	3 cut(s)	132, 222, 472
BfrI	CTTAAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	465
BisI	GCNGC	3 cut(s)	392, 492, 495
BlsI	GCNGC	3 cut(s)	393, 493, 496
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	403, 478, 481
BsiWI	CGTACG	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	181, 211, 226, 352
Bsp19I	CCATGG	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	465
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	206, 221
BspQI	GCTCTTC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	4 cut(s)	181, 211, 226, 352
BssT1I	CCWWGG	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	4 cut(s)	184, 214, 229, 355
BstMBI	GATC	4 cut(s)	181, 211, 226, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 480
BstNSI	RCATGY	1 cut(s)	154
BstSFI	CTRYAG	3 cut(s)	132, 222, 472
BstV1I	GCAGC	3 cut(s)	403, 478, 481
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	217, 244, 295
CviAII	CATG	4 cut(s)	151, 275, 289, 518
CviJI	RGCY	6 cut(s)	47, 59, 98, 137, 400, 491
CviKI_1	RGCY	6 cut(s)	47, 59, 98, 137, 400, 491
CviQI	GTAC	3 cut(s)	217, 244, 295
DpnI	GATC	4 cut(s)	183, 213, 228, 354
DpnII	GATC	4 cut(s)	181, 211, 226, 352
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	154, 278, 292, 521
FatI	CATG	4 cut(s)	150, 274, 288, 517
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	392, 492, 495
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	392, 492, 495
FspBI	CTAG	2 cut(s)	138, 438
GluI	GCNGC	3 cut(s)	392, 492, 495
Hin1II	CATG	4 cut(s)	154, 278, 292, 521
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	2 cut(s)	43, 343
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	2 cut(s)	240, 481
HpyCH4V	TGCA	5 cut(s)	4, 154, 391, 461, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 480
Hsp92II	CATG	4 cut(s)	154, 278, 292, 521
Kzo9I	GATC	4 cut(s)	181, 211, 226, 352
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	2 cut(s)	380, 460
Lsp1109I	GCAGC	3 cut(s)	403, 478, 481
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	138, 438
MalI	GATC	4 cut(s)	183, 213, 228, 354
MboI	GATC	4 cut(s)	181, 211, 226, 352
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	4 cut(s)	106, 115, 201, 261
MroXI	GAANNNNTTC	1 cut(s)	16
MseI	TTAA	2 cut(s)	69, 315
MspCI	CTTAAG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	397, 480
NcoI	CCATGG	1 cut(s)	517
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	4 cut(s)	181, 211, 226, 352
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	154, 278, 292, 521
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	154
PaqCI	CACCTGC	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	16
Pfl23II	CGTACG	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	393, 493, 496
PsiI	TTATAA	1 cut(s)	526
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	218, 245, 296
RsaNI	GTAC	3 cut(s)	217, 244, 295
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	69, 315
SatI	GCNGC	3 cut(s)	392, 492, 495
Sau3AI	GATC	4 cut(s)	181, 211, 226, 352
SetI	ASST	4 cut(s)	9, 49, 139, 479
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	3 cut(s)	132, 222, 472
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	106, 115, 201, 261
SspMI	CTAG	2 cut(s)	138, 438
StyI	CCWWGG	1 cut(s)	517
TaqI	TCGA	2 cut(s)	78, 303
TasI	AATT	4 cut(s)	106, 115, 201, 261
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	69, 315
Tru9I	TTAA	2 cut(s)	69, 315
TseI	GCWGC	3 cut(s)	391, 491, 494
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	204
Vha464I	CTTAAG	1 cut(s)	314
XapI	RAATTY	3 cut(s)	106, 115, 201
XceI	RCATGY	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	2 cut(s)	138, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.