Prupe.5G094700_v2.0.a1

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0024251
Physical Location & Seq
Forward (+)
10457865 .. 10460320
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G094700.1

Sequence Viewer

Length: 486 bp
ATGGCTCCTCGAGGAACCCTTGAAGTTACACTTGTCGGTGCTAAGGATCTTAAAAACATGGATACAATGGGTATGATGGATCCTTATGTCGTATTCACCTACAAAGATCAGGAGAAAAAGAGCCAGGTGGCAAACGGTCAAGGGTCTGAACCAGATTGGAATGAAACTTTTCTATTTACAATTGCTGGTGCTGAAGATGAACTCAGATTGAAGTTATATGACGAAGACTCTGGTAGCACTGATGATTCTGTGGGTGAATTAACAATTCCACTGGATGCAATAGTTACCGACAGCGGGTGCGAAGGGAGAATGCCAGCAACGCCATACGACGTAATGAGGAACGACAAAGTCAGAGGAGAAATTACCATTGGCCTCTTTTTCAATCCTGAGCCTGGCAGTGGAGATCGCGACTATGGCAGTGGAGATCGCGATCGCGACTATGGCAGTGGAGATCGCGACTGTGATGAAGAAGAAGAAGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

162

Amino Acids

17.8

Weight (kDa)

4.09

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024251)

Species Orthologous Gene IDs
malus_domestica MD06G1076700.v1.1
prunus_persica Prupe.5G094700_v2.0.a1
pyrus_communis pycom06g07420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 9
AccII CGCG 4 cut(s) 408, 429, 435, 456
AciI CCGC 1 cut(s) 294
AclWI GGATC 3 cut(s) 54, 74, 87
AcuI CTGAAG 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 294, 392, 398
AgsI TTSAA 3 cut(s) 23, 211, 382
AjnI CCWGG 2 cut(s) 123, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AlwI GGATC 3 cut(s) 54, 74, 87
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 1 cut(s) 370
AsiSI GCGATCGC 1 cut(s) 433
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 88, 266
AvaI CYCGRG 1 cut(s) 9
BamHI GGATCC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 2 cut(s) 125, 393
BciVI GTATCC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 125, 393
BmeT110I CYCGRG 1 cut(s) 9
BmiI GGNNCC 3 cut(s) 6, 16, 81
BmrFI CCNGG 2 cut(s) 125, 393
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 2 cut(s) 42, 387
BsaBI GATNNNNATC 1 cut(s) 429
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 392, 398
Bse1I ACTGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 2 cut(s) 125, 393
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 294, 392, 398
BseMII CTCAG 2 cut(s) 217, 378
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 369
Bsh1236I CGCG 4 cut(s) 408, 429, 435, 456
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 9
BslI CCNNNNNNNGG 3 cut(s) 294, 392, 398
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 1 cut(s) 372
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 7 cut(s) 46, 79, 106, 403, 424, 430, 451
Bsp68I TCGCGA 4 cut(s) 408, 429, 435, 456
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 2 cut(s) 216, 379
BspFNI CGCG 4 cut(s) 408, 429, 435, 456
BspLI GGNNCC 3 cut(s) 6, 16, 81
BspPI GGATC 3 cut(s) 54, 74, 87
BsrI ACTGG 1 cut(s) 276
BssMI GATC 7 cut(s) 46, 79, 106, 403, 424, 430, 451
Bst2UI CCWGG 2 cut(s) 125, 393
Bst4CI ACNGT 2 cut(s) 137, 461
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 3 cut(s) 42, 203, 387
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 4 cut(s) 408, 429, 435, 456
BstKTI GATC 7 cut(s) 49, 82, 109, 406, 427, 433, 454
BstMBI GATC 7 cut(s) 46, 79, 106, 403, 424, 430, 451
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 3 cut(s) 319, 414, 441
BstNI CCWGG 2 cut(s) 125, 393
BstSCI CCNGG 2 cut(s) 123, 391
BstUI CGCG 4 cut(s) 408, 429, 435, 456
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 46, 79
BstYI RGATCY 2 cut(s) 46, 79
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 3 cut(s) 403, 424, 451
BtsIMutI CAGTG 5 cut(s) 237, 269, 403, 424, 451
BtuMI TCGCGA 4 cut(s) 408, 429, 435, 456
Cac8I GCNNGC 1 cut(s) 315
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 5, 123, 372, 391
CviKI_1 RGCY 4 cut(s) 5, 123, 372, 391
DdeI CTNAG 3 cut(s) 42, 203, 387
DpnI GATC 7 cut(s) 48, 81, 108, 405, 426, 432, 453
DpnII GATC 7 cut(s) 46, 79, 106, 403, 424, 430, 451
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 123, 391
FaeI CATG 1 cut(s) 61
FaiI YATR 8 cut(s) 59, 74, 87, 217, 219, 325, 414, 441
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 287
FokI GGATG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 372
Hin1II CATG 1 cut(s) 61
HinfI GANTC 2 cut(s) 227, 245
HphI GGTGA 2 cut(s) 88, 266
Hpy188I TCNGA 3 cut(s) 148, 206, 353
Hpy188III TCNNGA 6 cut(s) 110, 386, 407, 428, 434, 455
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 2 cut(s) 137, 461
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 414, 441
HpyF3I CTNAG 3 cut(s) 42, 203, 387
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 7 cut(s) 46, 79, 106, 403, 424, 430, 451
LmnI GCTCC 1 cut(s) 10
LweI GCATC 1 cut(s) 265
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 25, 283
MalI GATC 7 cut(s) 48, 81, 108, 405, 426, 432, 453
MboI GATC 7 cut(s) 46, 79, 106, 403, 424, 430, 451
MboII GAAGA 5 cut(s) 206, 236, 479, 482, 485
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 2 cut(s) 46, 79
MluCI AATT 4 cut(s) 180, 257, 264, 360
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 5 cut(s) 5, 18, 330, 347, 383
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 2 cut(s) 51, 260
MspA1I CMGCKG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 125, 393
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 2 cut(s) 125, 393
MvnI CGCG 4 cut(s) 408, 429, 435, 456
MwoI GCNNNNNNNGC 3 cut(s) 319, 414, 441
NdeII GATC 7 cut(s) 46, 79, 106, 403, 424, 430, 451
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 3 cut(s) 6, 16, 81
NruI TCGCGA 4 cut(s) 408, 429, 435, 456
PaeR7I CTCGAG 1 cut(s) 9
PctI GAATGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 245
PflFI GACNNNGTC 1 cut(s) 347
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 123, 391
PspGI CCWGG 2 cut(s) 123, 391
PspN4I GGNNCC 3 cut(s) 6, 16, 81
PspXI VCTCGAGB 1 cut(s) 9
PsuI RGATCY 2 cut(s) 46, 79
PsyI GACNNNGTC 1 cut(s) 347
PvuI CGATCG 1 cut(s) 433
RgaI GCGATCGC 1 cut(s) 433
RruI TCGCGA 4 cut(s) 408, 429, 435, 456
SaqAI TTAA 2 cut(s) 51, 260
Sau3AI GATC 7 cut(s) 46, 79, 106, 403, 424, 430, 451
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 125, 393
SetI ASST 3 cut(s) 101, 129, 333
SfaAI GCGATCGC 1 cut(s) 433
SfaNI GCATC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 9
SgfI GCGATCGC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 4 cut(s) 180, 257, 264, 360
SsiI CCGC 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 123, 391
TaaI ACNGT 2 cut(s) 137, 461
TaiI ACGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 10
TasI AATT 4 cut(s) 180, 257, 264, 360
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 51, 260
Tru9I TTAA 2 cut(s) 51, 260
TscAI CASTG 5 cut(s) 244, 276, 403, 424, 451
TspDTI ATGAA 3 cut(s) 177, 213, 480
TspRI CASTG 5 cut(s) 244, 276, 403, 424, 451
Tth111I GACNNNGTC 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.