pycom06g07420

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0024251
Physical Location & Seq
Forward (+)
12064489 .. 12066277
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07420.3

Sequence Viewer

Length: 444 bp
ATGGCGCCTCGAGGAACCCTAGAAGTTCAACTTGTTGGTGCTAAGGAACTGAAAAATATGGACGTCGGGATGATGGATCCTTATTGTGTAATCACCTACAAAGATCAGCAGAAGAAGAGCGGCGTGGCACGCGGTCAGGGGTCTATGCCAGACTGGAACGAAACTCTGCTATTCACCATTGCTGGTGCTGAAGATGATCTCAGGATAAAAATATATGACCAGGACAGTGGTTCCCTTGATGATTACGTAGGAGAATTAAAAATTCCGCTAGATGCAATAGTAACCGACACTGGTTGCGAGGGGAGAATGCCACCAACGCCATACGAGGTAATGAGGCATGACGAAGTCAAAGGAGAGATTACCATTGGCCTCTATTTCAATCCTGAGCCTGGCCATGAAAGCCGTGGTGATTGCTGTGATGACGAGGAAGAAGAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

148

Amino Acids

16.38

Weight (kDa)

4.25

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024251)

Species Orthologous Gene IDs
malus_domestica MD06G1076700.v1.1
prunus_persica Prupe.5G094700_v2.0.a1
pyrus_communis pycom06g07420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AbsI CCTCGAGG 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 120
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 120, 132, 266
AclWI GGATC 2 cut(s) 71, 84
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 2 cut(s) 5, 63
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 2 cut(s) 29, 379
AjnI CCWGG 2 cut(s) 219, 388
AlwI GGATC 2 cut(s) 71, 84
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 2 cut(s) 367, 391
ApoI RAATTY 1 cut(s) 261
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 3 cut(s) 85, 166, 419
AvaI CYCGRG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 393
BamHI GGATCC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 387
BciT130I CCWGG 2 cut(s) 221, 390
BfaI CTAG 2 cut(s) 20, 269
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 221, 390
BmeT110I CYCGRG 1 cut(s) 9
BmiI GGNNCC 4 cut(s) 6, 16, 78, 232
BmrFI CCNGG 2 cut(s) 221, 390
BmsI GCATC 1 cut(s) 262
Bpu10I CCTNAGC 2 cut(s) 42, 384
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 2 cut(s) 5, 63
BsaJI CCNNGG 1 cut(s) 403
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 158, 295
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 2 cut(s) 221, 390
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 214, 375
BseNI ACTGG 2 cut(s) 158, 295
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 369, 393
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 389
BsmI GAATGC 1 cut(s) 312
BsnI GGCC 2 cut(s) 369, 393
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 3 cut(s) 76, 103, 196
BspACI CCGC 3 cut(s) 120, 132, 266
BspANI GGCC 2 cut(s) 369, 393
BspCNI CTCAG 2 cut(s) 213, 376
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 4 cut(s) 6, 16, 78, 232
BspPI GGATC 2 cut(s) 71, 84
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 2 cut(s) 158, 295
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 3 cut(s) 76, 103, 196
BssNI GRCGYC 2 cut(s) 5, 63
Bst2UI CCWGG 2 cut(s) 221, 390
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 2 cut(s) 5, 63
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 3 cut(s) 42, 200, 384
BstDSI CCRYGG 1 cut(s) 403
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 79, 106, 199
BstMBI GATC 3 cut(s) 76, 103, 196
BstMWI GCNNNNNNNGC 3 cut(s) 129, 316, 399
BstNI CCWGG 2 cut(s) 221, 390
BstSCI CCNGG 2 cut(s) 219, 388
BstSNI TACGTA 1 cut(s) 247
BstUI CGCG 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 369, 393
BtgI CCRYGG 1 cut(s) 403
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 232, 288
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 7
CviAII CATG 2 cut(s) 338, 395
CviJI RGCY 4 cut(s) 369, 388, 393, 402
CviKI_1 RGCY 4 cut(s) 369, 388, 393, 402
DdeI CTNAG 3 cut(s) 42, 200, 384
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 78, 105, 198
DpnII GATC 3 cut(s) 76, 103, 196
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco105I TACGTA 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 219, 388
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 341, 398
FaiI YATR 7 cut(s) 59, 146, 214, 216, 322, 339, 396
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 2 cut(s) 337, 394
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 2 cut(s) 20, 269
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 369, 393
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 5, 63
Hin1II CATG 2 cut(s) 341, 398
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HphI GGTGA 3 cut(s) 85, 166, 419
Hpy188III TCNNGA 3 cut(s) 67, 202, 383
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 2 cut(s) 63, 246
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 316, 399
HpyF3I CTNAG 3 cut(s) 42, 200, 384
HpySE526I ACGT 2 cut(s) 63, 246
Hsp92I GRCGYC 2 cut(s) 5, 63
Hsp92II CATG 2 cut(s) 341, 398
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 76, 103, 196
LguI GCTCTTC 1 cut(s) 110
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 20, 269
MaeII ACGT 2 cut(s) 63, 246
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 78, 105, 198
MbiI CCGCTC 1 cut(s) 120
MboI GATC 3 cut(s) 76, 103, 196
MboII GAAGA 5 cut(s) 124, 127, 203, 440, 443
MflI RGATCY 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 2 cut(s) 254, 261
MluNI TGGCCA 1 cut(s) 393
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 7 cut(s) 5, 18, 292, 319, 327, 380, 418
Mox20I TGGCCA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 393
MseI TTAA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 221, 390
Mva1269I GAATGC 1 cut(s) 312
MvaI CCWGG 2 cut(s) 221, 390
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 129, 316, 399
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 76, 103, 196
NlaIII CATG 2 cut(s) 341, 398
NlaIV GGNNCC 4 cut(s) 6, 16, 78, 232
PaeR7I CTCGAG 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 110
PctI GAATGC 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 1 cut(s) 122
PluTI GGCGCC 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 219, 388
PspGI CCWGG 2 cut(s) 219, 388
PspN4I GGNNCC 4 cut(s) 6, 16, 78, 232
PspXI VCTCGAGB 1 cut(s) 9
PsuI RGATCY 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 3 cut(s) 76, 103, 196
ScrFI CCNGG 2 cut(s) 221, 390
SetI ASST 4 cut(s) 66, 98, 249, 330
SfaNI GCATC 1 cut(s) 262
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 9
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SnaBI TACGTA 1 cut(s) 247
Sse9I AATT 2 cut(s) 254, 261
SsiI CCGC 3 cut(s) 120, 132, 266
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 20, 269
StyD4I CCNGG 2 cut(s) 219, 388
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 2 cut(s) 66, 249
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 254, 261
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 2 cut(s) 232, 295
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 2 cut(s) 232, 295
Tth111I GACNNNGTC 1 cut(s) 344
XapI RAATTY 1 cut(s) 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XhoI CTCGAG 1 cut(s) 9
XspI CTAG 2 cut(s) 20, 269
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.