Prupe.5G161900_v2.0.a1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0024552
Physical Location & Seq
Reverse (-)
14205775 .. 14206650
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G161900.1

Sequence Viewer

Length: 753 bp
ATGAAAATGAAAGGTCTTGAGGTTGAGTTGTGGTTGTCGGAAAATCGCCTCCCTAACACGATGAAGACACGGATCATGGAAAATGTACATCGAAAACTTGAAGAAAACAAAAATGTTCATGTGGAGATCCTCTTTGTTCTTCCCCCGGACTATTTAAGCTATGTCAAGCGCTGTCTCTGCTTGGCTACGCTAAGGAAAGTTCCGAAGCTTAAAGACATAGATGGATTGGAAGAGTTGAAAGGAATCTGTGATCATTTTAAGCCAGTGATCTATGCTAAGGATAGTTTTATTATTCGAGAGGGCGAGGCCCTTGATATGATCCTCTTGGTCACGCAAGGGACTGTTCGCAGCTACACAACTAGTAACGGAGTAAAAAAGGATCCCACAACACCTAAGCATATTAAGCAAGGTGATTTCTATGGAGAAGAACTGATAAGTTGGGCATCAAAATTTCCCCCCTCCACTGAGTTACCCATCTCGGATAAAAATGTTAGGTCCATTACAAGGGTTGAAGCATTTGCTCTCACGGCCGAGGACTTAAAGAATCATGTGCTCCTTAGATATTTCTGGTGGCAATTTACCAAGGGAATCGATCTCAACAATTTGACTGACTCTCAGATGCTGCAGTTGAAAGAATTGGCAGTTATAAACCCACAAAGAGCATTTCGGGGCCGCAAGAGAGCGGAGAAGCCTGCCGCCTTGCCAATGAAAACTCGGTCCATGTCAGTTGTCCCAATTCTGTCAGAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

251

Amino Acids

28.84

Weight (kDa)

9.38

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024552)

Species Orthologous Gene IDs
prunus_persica Prupe.5G161900_v2.0.a1
rosa_multiflora Rmu_sc0001631.1_g000003 Rmu_ssc0000421.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 683
AciI CCGC 3 cut(s) 673, 683, 696
AclWI GGATC 5 cut(s) 80, 121, 313, 374, 387
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 1 cut(s) 449
AfaI GTAC 1 cut(s) 87
AfeI AGCGCT 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 504
AgsI TTSAA 4 cut(s) 101, 238, 512, 631
AhlI ACTAGT 1 cut(s) 359
AluBI AGCT 3 cut(s) 159, 208, 351
AluI AGCT 3 cut(s) 159, 208, 351
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 5 cut(s) 80, 121, 313, 374, 387
AlwNI CAGNNNCTG 1 cut(s) 622
Aor51HI AGCGCT 1 cut(s) 170
AoxI GGCC 3 cut(s) 306, 528, 670
ApeKI GCWGC 2 cut(s) 348, 622
ApoI RAATTY 1 cut(s) 449
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 4 cut(s) 307, 495, 670, 717
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 2 cut(s) 495, 717
BamHI GGATCC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 360, 609
BccI CCATC 2 cut(s) 215, 482
BceAI ACGGC 1 cut(s) 543
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 179
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 623
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 4 cut(s) 349, 623, 673, 696
BlsI GCNGC 4 cut(s) 350, 624, 674, 697
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 495, 717
BmgT120I GGNCC 4 cut(s) 307, 495, 670, 717
BmiI GGNNCC 2 cut(s) 381, 671
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 452, 609
BpiI GAAGAC 1 cut(s) 71
Bpu10I CCTNAGC 3 cut(s) 191, 276, 393
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 591
BsaJI CCNNGG 3 cut(s) 144, 531, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse1I ACTGG 1 cut(s) 263
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 144, 531, 582
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 456, 629
BseNI ACTGG 1 cut(s) 263
BseX3I CGGCCG 1 cut(s) 528
BseXI GCAGC 2 cut(s) 360, 609
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 3 cut(s) 308, 530, 672
BshVI ATCGAT 1 cut(s) 591
BsiEI CGRYCG 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 352, 716
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 352, 716
BsnI GGCC 3 cut(s) 308, 530, 672
Bsp1286I GDGCHC 1 cut(s) 555
Bsp1407I TGTACA 1 cut(s) 85
Bsp143I GATC 7 cut(s) 72, 126, 250, 267, 318, 379, 592
BspACI CCGC 3 cut(s) 673, 683, 696
BspANI GGCC 3 cut(s) 308, 530, 672
BspCNI CTCAG 2 cut(s) 457, 628
BspDI ATCGAT 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 381, 671
BspMAI CTGCAG 1 cut(s) 627
BspPI GGATC 5 cut(s) 80, 121, 313, 374, 387
BsrBI CCGCTC 1 cut(s) 683
BsrGI TGTACA 1 cut(s) 85
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 144, 531, 582
BssMI GATC 7 cut(s) 72, 126, 250, 267, 318, 379, 592
BssT1I CCWWGG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 6 cut(s) 191, 276, 393, 465, 557, 615
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 7 cut(s) 75, 129, 253, 270, 321, 382, 595
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 7 cut(s) 72, 126, 250, 267, 318, 379, 592
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 3 cut(s) 177, 403, 527
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 360, 609
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 2 cut(s) 126, 379
BstYI RGATCY 2 cut(s) 126, 379
BstZI CGGCCG 1 cut(s) 528
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 3 cut(s) 308, 530, 672
BsuTUI ATCGAT 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 270, 462
Cac8I GCNNGC 1 cut(s) 693
CaiI CAGNNNCTG 1 cut(s) 622
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 4 cut(s) 307, 495, 670, 717
ClaI ATCGAT 1 cut(s) 591
Csp6I GTAC 1 cut(s) 86
CviAII CATG 4 cut(s) 76, 119, 548, 721
CviJI RGCY 9 cut(s) 159, 185, 208, 262, 308, 351, 530, 672, 691
CviKI_1 RGCY 9 cut(s) 159, 185, 208, 262, 308, 351, 530, 672, 691
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 6 cut(s) 191, 276, 393, 465, 557, 615
DpnI GATC 7 cut(s) 74, 128, 252, 269, 320, 381, 594
DpnII GATC 7 cut(s) 72, 126, 250, 267, 318, 379, 592
EaeI YGGCCR 1 cut(s) 528
EagI CGGCCG 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EclXI CGGCCG 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 495, 717
Eco47III AGCGCT 1 cut(s) 170
Eco52I CGGCCG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 4 cut(s) 79, 122, 551, 724
FaqI GGGAC 2 cut(s) 352, 716
FatI CATG 4 cut(s) 75, 118, 547, 720
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 349, 623, 673, 696
Fsp4HI GCNGC 4 cut(s) 349, 623, 673, 696
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 170
GluI GCNGC 4 cut(s) 349, 623, 673, 696
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 3 cut(s) 308, 530, 672
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 171
Hin1II CATG 4 cut(s) 79, 122, 551, 724
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 4 cut(s) 243, 544, 588, 611
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 422
Hpy188I TCNGA 5 cut(s) 40, 204, 481, 618, 745
Hpy188III TCNNGA 2 cut(s) 17, 296
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 403, 527
HpyF3I CTNAG 6 cut(s) 191, 276, 393, 465, 557, 615
Hsp92II CATG 4 cut(s) 79, 122, 551, 724
HspAI GCGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 7 cut(s) 72, 126, 250, 267, 318, 379, 592
LmnI GCTCC 1 cut(s) 558
LpnPI CCDG 4 cut(s) 159, 276, 553, 705
Lsp1109I GCAGC 2 cut(s) 360, 609
LweI GCATC 2 cut(s) 452, 609
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 3 cut(s) 328, 362, 468
MalI GATC 7 cut(s) 74, 128, 252, 269, 320, 381, 594
MbiI CCGCTC 1 cut(s) 683
MboI GATC 7 cut(s) 72, 126, 250, 267, 318, 379, 592
MboII GAAGA 5 cut(s) 76, 113, 131, 242, 437
MflI RGATCY 2 cut(s) 126, 379
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 5 cut(s) 449, 575, 601, 635, 735
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 8 cut(s) 13, 59, 140, 292, 298, 332, 469, 526
MseI TTAA 5 cut(s) 155, 210, 258, 402, 539
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 177, 403, 527
NciI CCSGG 1 cut(s) 146
NdeII GATC 7 cut(s) 72, 126, 250, 267, 318, 379, 592
NlaIII CATG 4 cut(s) 79, 122, 551, 724
NlaIV GGNNCC 2 cut(s) 381, 671
NmeAIII GCCGAG 1 cut(s) 556
NmuCI GTSAC 1 cut(s) 328
PfeI GAWTC 3 cut(s) 243, 544, 588
PkrI GCNGC 4 cut(s) 350, 624, 674, 697
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
PsiI TTATAA 1 cut(s) 647
PspN4I GGNNCC 2 cut(s) 381, 671
PspPI GGNCC 4 cut(s) 307, 495, 670, 717
PstI CTGCAG 1 cut(s) 627
PstNI CAGNNNCTG 1 cut(s) 622
PsuI RGATCY 2 cut(s) 126, 379
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 5 cut(s) 155, 210, 258, 402, 539
SatI GCNGC 4 cut(s) 349, 623, 673, 696
Sau3AI GATC 7 cut(s) 72, 126, 250, 267, 318, 379, 592
Sau96I GGNCC 4 cut(s) 307, 495, 670, 717
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 555
SetI ASST 8 cut(s) 16, 24, 161, 210, 353, 394, 412, 497
SfaNI GCATC 2 cut(s) 452, 609
SfcI CTRYAG 1 cut(s) 623
SinI GGWCC 2 cut(s) 495, 717
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 5 cut(s) 449, 575, 601, 635, 735
SsiI CCGC 3 cut(s) 673, 683, 696
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 3 cut(s) 91, 295, 591
TaqII GACCGA 1 cut(s) 705
TasI AATT 5 cut(s) 449, 575, 601, 635, 735
TatI WGTACW 1 cut(s) 85
TauI GCSGC 2 cut(s) 675, 698
TfiI GAWTC 3 cut(s) 243, 544, 588
Tru1I TTAA 5 cut(s) 155, 210, 258, 402, 539
Tru9I TTAA 5 cut(s) 155, 210, 258, 402, 539
TscAI CASTG 2 cut(s) 270, 469
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 348, 622
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 5 cut(s) 17, 23, 77, 107, 722
TspGWI ACGGA 2 cut(s) 85, 381
TspRI CASTG 2 cut(s) 270, 469
VpaK11BI GGWCC 2 cut(s) 495, 717
XapI RAATTY 1 cut(s) 449
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.