Rmu_sc0001631.1_g000003

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001631.1
Physical Location & Seq
Forward (+)
6048 .. 6500
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001631.1_g000003.1.cds

Sequence Viewer

Length: 453 bp
atggatgatttgaagggaatttgtgagcttttaaagccaatgatatttgccaaggatacctttattcttcgagaaggagaggctattgacatgataatcttcatgtcactaggcattgttcggacttacacaactcctaatgatggaatacgtgcccattctctcaagaaaggcaatttttatggagaagaacttgtaagttgggcatcgagatttcctccctcttcagacttgcccatctcgaaaagaattgttaggtcgcttacaaaagttgaatgttttgctctcatggccgacgacttgaagaatcacgtcatccttaaatacttttggtggcaattcaccaaggatatgaatctcaaccatttgaacaagtttgagatggccctgttggaggaattggcacttgcatccctaggaagagcaattttgcgcctgaaaaaacggcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

17.36

Weight (kDa)

9.12

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024552)

Species Orthologous Gene IDs
prunus_persica Prupe.5G161900_v2.0.a1
rosa_multiflora Rmu_sc0001631.1_g000003 Rmu_ssc0000421.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 143, 394
AgsI TTSAA 4 cut(s) 13, 275, 304, 370
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
AoxI GGCC 2 cut(s) 291, 384
ApoI RAATTY 1 cut(s) 18
AspA2I CCTAGG 1 cut(s) 415
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 334
AvrII CCTAGG 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 157
BccI CCATC 3 cut(s) 137, 245, 376
BciVI GTATCC 1 cut(s) 49
BfaI CTAG 2 cut(s) 110, 416
BfuI GTATCC 1 cut(s) 49
BlnI CCTAGG 1 cut(s) 415
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 385
BmsI GCATC 2 cut(s) 215, 419
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpuEI CTTGAG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 51, 345, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 394
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 3 cut(s) 51, 345, 415
BseGI GGATG 3 cut(s) 10, 315, 410
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 143, 394
BseSI GKGCMC 1 cut(s) 157
BshFI GGCC 2 cut(s) 293, 386
BslI CCNNNNNNNGG 2 cut(s) 143, 394
BsnI GGCC 2 cut(s) 293, 386
Bsp1286I GDGCHC 1 cut(s) 157
BspANI GGCC 2 cut(s) 293, 386
BspQI GCTCTTC 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 51, 345, 415
BssT1I CCWWGG 3 cut(s) 51, 345, 415
Bst6I CTCTTC 2 cut(s) 229, 415
BstBAI YACGTR 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 392
BstF5I GGATG 3 cut(s) 10, 315, 410
BstHHI GCGC 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 34, 290
BstSLI GKGCMC 1 cut(s) 157
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 293, 386
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 3 cut(s) 10, 315, 410
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 385
CviAII CATG 3 cut(s) 91, 103, 289
CviJI RGCY 5 cut(s) 28, 37, 83, 293, 386
CviKI_1 RGCY 5 cut(s) 28, 37, 83, 293, 386
DraI TTTAAA 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 229, 415
EarI CTCTTC 2 cut(s) 229, 415
Eco130I CCWWGG 3 cut(s) 51, 345, 415
Eco57I CTGAAG 1 cut(s) 210
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoT14I CCWWGG 3 cut(s) 51, 345, 415
ErhI CCWWGG 3 cut(s) 51, 345, 415
FaeI CATG 3 cut(s) 94, 106, 292
FaiI YATR 5 cut(s) 92, 104, 183, 290, 353
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 3 cut(s) 90, 102, 288
FokI GGATG 3 cut(s) 17, 302, 397
FspBI CTAG 2 cut(s) 110, 416
GlaI GCGC 1 cut(s) 434
HaeIII GGCC 2 cut(s) 293, 386
HhaI GCGC 1 cut(s) 435
Hin1II CATG 3 cut(s) 94, 106, 292
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 2 cut(s) 307, 355
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 123, 229
Hpy188III TCNNGA 4 cut(s) 71, 166, 210, 241
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 7, 68
HpyCH4IV ACGT 2 cut(s) 151, 312
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 290
HpySE526I ACGT 2 cut(s) 151, 312
Hsp92II CATG 3 cut(s) 94, 106, 292
HspAI GCGC 1 cut(s) 433
LguI GCTCTTC 1 cut(s) 415
LpnPI CCDG 2 cut(s) 401, 449
LweI GCATC 2 cut(s) 215, 419
MaeI CTAG 2 cut(s) 110, 416
MaeII ACGT 2 cut(s) 151, 312
MaeIII GTNAC 1 cut(s) 105
MboII GAAGA 6 cut(s) 59, 91, 200, 216, 316, 432
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 6 cut(s) 18, 175, 249, 338, 398, 426
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 4 cut(s) 73, 228, 232, 388
MseI TTAA 3 cut(s) 32, 321, 451
MwoI GCNNNNNNNGC 2 cut(s) 34, 290
NlaIII CATG 3 cut(s) 94, 106, 292
NmuCI GTSAC 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 307, 355
Ppu21I YACGTR 1 cut(s) 152
PspPI GGNCC 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 415
SaqAI TTAA 3 cut(s) 32, 321, 451
Sau96I GGNCC 1 cut(s) 385
SduI GDGCHC 1 cut(s) 157
SetI ASST 5 cut(s) 30, 62, 154, 260, 315
SfaNI GCATC 2 cut(s) 215, 419
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 6 cut(s) 18, 175, 249, 338, 398, 426
SspMI CTAG 2 cut(s) 110, 416
StyI CCWWGG 3 cut(s) 51, 345, 415
TaiI ACGT 2 cut(s) 154, 315
TaqI TCGA 3 cut(s) 70, 209, 242
TasI AATT 6 cut(s) 18, 175, 249, 338, 398, 426
TfiI GAWTC 2 cut(s) 307, 355
Tru1I TTAA 3 cut(s) 32, 321, 451
Tru9I TTAA 3 cut(s) 32, 321, 451
TseFI GTSAC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 2 cut(s) 91, 368
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 1 cut(s) 18
XmaJI CCTAGG 1 cut(s) 415
XspI CTAG 2 cut(s) 110, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.