Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0021885

Physical Location & Seq

Genomic Coordinates Reverse (-)

15553242 .. 15554689

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G189300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTCCAGCCGAAGGTCAAGATCTAGGCAATCAGGTGGTGCAAGAATCTCGGACGATCAGATTAATGATCTCGTTTCGAAATTGCAACAACTTCTTCCCGAGATTCGTAACAGTAGACGTTCTGACAAGGTTTCAGCAGCCACGGTGCTACAGGAAACGTGCAACTATATAAGAAGCTTGCACAGGGAAGTGGATGATCTAAGCGAGAGGCTGTCTGAGCTTTTGGCAACAACTGACAGTGCCCAAGCTGCTGTGATCAGGAGCTTACTTTCGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0010015 GO:0010086 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048598 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0080113 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

93

Amino Acids

10.3

Weight (kDa)

9.17

Isoelectric Point (pI)

91.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74500
malus_domestica	MD14G1197100.v1.1
prunus_persica	Prupe.5G189300_v2.0.a1
pyrus_communis	pycom14g16380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	12
AluBI	AGCT	4 cut(s)	177, 220, 248, 264
AluI	AGCT	4 cut(s)	177, 220, 248, 264
Ama87I	CYCGRG	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	137, 248
AseI	ATTAAT	1 cut(s)	63
AsuII	TTCGAA	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	149, 235
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BclI	TGATCA	1 cut(s)	255
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	2 cut(s)	138, 249
BlsI	GCNGC	2 cut(s)	139, 250
BmeT110I	CYCGRG	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	149, 235
BsiHKCI	CYCGRG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	12
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	5 cut(s)	20, 55, 67, 196, 255
BspCNI	CTCAG	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	5 cut(s)	20, 55, 67, 196, 255
Bst4CI	ACNGT	3 cut(s)	113, 145, 239
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	200, 216
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	5 cut(s)	23, 58, 70, 199, 258
BstMBI	GATC	5 cut(s)	20, 55, 67, 196, 255
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 248
BstSFI	CTRYAG	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	149, 235
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	179
CviJI	RGCY	7 cut(s)	9, 140, 177, 211, 220, 248, 264
CviKI_1	RGCY	7 cut(s)	9, 140, 177, 211, 220, 248, 264
DdeI	CTNAG	2 cut(s)	200, 216
DpnI	GATC	5 cut(s)	22, 57, 69, 198, 257
DpnII	GATC	5 cut(s)	20, 55, 67, 196, 255
Eco88I	CYCGRG	1 cut(s)	98
FaiI	YATR	2 cut(s)	168, 170
FbaI	TGATCA	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	138, 249
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	138, 249
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	2 cut(s)	138, 249
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	2 cut(s)	45, 103
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	4 cut(s)	52, 60, 124, 217
Hpy188III	TCNNGA	3 cut(s)	18, 98, 259
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	3 cut(s)	113, 145, 239
HpyCH4IV	ACGT	2 cut(s)	118, 158
HpyCH4V	TGCA	4 cut(s)	41, 85, 162, 181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 248
HpyF3I	CTNAG	2 cut(s)	200, 216
HpySE526I	ACGT	2 cut(s)	118, 158
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	20, 55, 67, 196, 255
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	5 cut(s)	18, 19, 137, 169, 244
Lsp1109I	GCAGC	2 cut(s)	149, 235
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	2 cut(s)	118, 158
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	5 cut(s)	22, 57, 69, 198, 257
MboI	GATC	5 cut(s)	20, 55, 67, 196, 255
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	217, 248
NdeII	GATC	5 cut(s)	20, 55, 67, 196, 255
NspV	TTCGAA	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	45, 103
PkrI	GCNGC	2 cut(s)	139, 250
PshBI	ATTAAT	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	138, 249
Sau3AI	GATC	5 cut(s)	20, 55, 67, 196, 255
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	9 cut(s)	17, 37, 121, 132, 161, 179, 222, 250, 266
SfcI	CTRYAG	1 cut(s)	149
SfuI	TTCGAA	1 cut(s)	77
Sse9I	AATT	1 cut(s)	80
SspMI	CTAG	1 cut(s)	24
TaaI	ACNGT	3 cut(s)	113, 145, 239
TaiI	ACGT	2 cut(s)	121, 161
TaqI	TCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	45, 103
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	2 cut(s)	137, 248
TspRI	CASTG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.