Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0024264

Physical Location & Seq

Genomic Coordinates Forward (+)

15968256 .. 15969622

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G197600.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGAGGAGCGAAGACCGGTTCGAATACGCGTTCTTCGACTTGGAGACAACAAAGCCGACCCAACCCGGCCAGGAATGCATCATATTGGAGTTCGGGGCGATTCTGGTTTGCCCGAGTACGCTGGTGGAGCTCGACCACTACTACACCCTGGTCCGACCCGCCGACCTCTCCTCAATCGCCTCCTTGCCCATGCGCAGCAATGGCATTAACATAGACACCGTCGCTTCCTCCCCTACCTTTCAAGAGATTGCAGATGAGGTCTACGACATTCTCCACGGACGTATATGGGCAGGTCACAATATACTGGGGTTTGATTGTGCTCGGATCCAGGAGGCGTTCGCACACATTGGTCGCCCTGCACCCAAACCCAAGGGTACTATTGATTCCTTGACATTGTTGACACAGCGCTTTGGAAGGAGAGCTGGTAACATGAAGCTGGACACTCTTGCAAACCATTTTGGGCTTGGACGGCAGGAACACAGGAGTTTGGCTGATGTTCGACTGAATCTTGAAGTTTTGAAATACTGTGCAACTGTCTTATTCCTGGTAATAATCTATTTTCGGAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

192

Amino Acids

21.48

Weight (kDa)

6.3

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024264)

Species	Orthologous Gene IDs
malus_domestica	MD14G1204000.v1.1 MD14G1204100.v1.1
prunus_persica	Prupe.5G197600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	2 cut(s)	322, 335
AcoI	YGGCCR	1 cut(s)	70
AfaI	GTAC	2 cut(s)	121, 379
AfeI	AGCGCT	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	30
AgeI	ACCGGT	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	245, 515, 523
AjnI	CCWGG	4 cut(s)	72, 150, 330, 546
AluBI	AGCT	3 cut(s)	133, 425, 439
AluI	AGCT	3 cut(s)	133, 425, 439
Alw21I	GWGCWC	2 cut(s)	135, 325
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	322, 335
Ama87I	CYCGRG	1 cut(s)	115
Aor51HI	AGCGCT	1 cut(s)	410
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	198
AsiGI	ACCGGT	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	198, 411
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	135, 325
BbvI	GCAGC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	4 cut(s)	74, 152, 332, 548
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	5 cut(s)	69, 74, 152, 332, 548
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	5 cut(s)	69, 74, 152, 332, 548
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	150, 277, 372
BsaWI	WCCGGW	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bse118I	RCCGGY	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	4 cut(s)	74, 152, 332, 548
BseDI	CCNNGG	3 cut(s)	150, 277, 372
BseMI	GCAATG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	22, 163
BseXI	GCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	72
BshTI	ACCGGT	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	135, 325
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	19, 69
BsmAI	GTCTC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	115
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	135, 325
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	329
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	322, 335
BspT104I	TTCGAA	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	150, 277, 372
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	4 cut(s)	74, 152, 332, 548
Bst4CI	ACNGT	3 cut(s)	223, 530, 538
BstBI	TTCGAA	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	198, 411
BstKTI	GATC	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 130, 204, 472
BstNI	CCWGG	4 cut(s)	74, 152, 332, 548
BstSCI	CCNGG	5 cut(s)	67, 72, 150, 330, 546
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	284
CfoI	GCGC	2 cut(s)	198, 411
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	120, 378
CspAI	ACCGGT	1 cut(s)	18
CviAII	CATG	3 cut(s)	193, 433, 573
CviJI	RGCY	7 cut(s)	58, 72, 133, 425, 439, 466, 494
CviKI_1	RGCY	7 cut(s)	58, 72, 133, 425, 439, 466, 494
CviQI	GTAC	2 cut(s)	120, 378
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	154
Eco47III	AGCGCT	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	4 cut(s)	72, 150, 330, 546
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	3 cut(s)	196, 436, 576
FaiI	YATR	8 cut(s)	86, 194, 215, 287, 289, 305, 434, 574
FatI	CATG	3 cut(s)	192, 432, 572
FauI	CCCGC	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	199
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	2 cut(s)	197, 410
GluI	GCNGC	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	19, 69
HhaI	GCGC	2 cut(s)	198, 411
Hin1II	CATG	3 cut(s)	196, 436, 576
Hin6I	GCGC	2 cut(s)	196, 409
HinP1I	GCGC	2 cut(s)	196, 409
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	3 cut(s)	103, 386, 508
HpaII	CCGG	2 cut(s)	19, 69
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	265, 402
Hpy188I	TCNGA	3 cut(s)	158, 327, 567
Hpy188III	TCNNGA	2 cut(s)	245, 512
Hpy8I	GTNNAC	2 cut(s)	265, 402
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	411, 562
HpyCH4III	ACNGT	3 cut(s)	223, 530, 538
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	81, 254, 362, 452, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 130, 204, 472
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	3 cut(s)	196, 436, 576
HspAI	GCGC	2 cut(s)	196, 409
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	9, 130
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	90
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	296, 428
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	2 cut(s)	26, 28
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	135, 325
MluI	ACGCGT	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	6 cut(s)	179, 184, 193, 241, 253, 328
Mph1103I	ATGCAT	1 cut(s)	83
MseI	TTAA	1 cut(s)	210
MspI	CCGG	2 cut(s)	19, 69
MspR9I	CCNGG	5 cut(s)	69, 74, 152, 332, 548
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	4 cut(s)	74, 152, 332, 548
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	4 cut(s)	78, 130, 204, 472
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	3 cut(s)	196, 436, 576
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	296
NsbI	TGCGCA	1 cut(s)	197
NsiI	ATGCAT	1 cut(s)	83
NspV	TTCGAA	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	103, 386, 508
PflFI	GACNNNGTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	330
PinAI	ACCGGT	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	4 cut(s)	72, 150, 330, 546
PspGI	CCWGG	4 cut(s)	72, 150, 330, 546
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	327
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	2 cut(s)	121, 379
RsaNI	GTAC	2 cut(s)	120, 378
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	5 cut(s)	69, 74, 152, 332, 548
SduI	GDGCHC	2 cut(s)	135, 325
SetI	ASST	8 cut(s)	135, 171, 242, 264, 286, 298, 427, 441
SfaNI	GCATC	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	154
SsiI	CCGC	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	5 cut(s)	67, 72, 150, 330, 546
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	223, 530, 538
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	4 cut(s)	24, 39, 135, 502
TfiI	GAWTC	3 cut(s)	103, 386, 508
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	449
TspGWI	ACGGA	1 cut(s)	294
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.