Prupe.5G199600_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0029072
Physical Location & Seq
Forward (+)
16070335 .. 16071862
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G199600.1

Sequence Viewer

Length: 1458 bp
ATGGCTTCACTTCCTACAGTGATCCGTCTTGATCTGTTTTTCAACGTGAAAAAACCACAAAAAGAAAAAGTAGAAGACGACGACAACGAGCAGAAGCAGGCCTCCCTAGATTCACATTATTCCCTTAATCTTCTGCCGCAACTGCTGGAGGTAGCCTGGTCCCACGATCCCCTAACCACCCTCAAGCTCATCTTCAACCTCAACTCTTGTCATTTTCATACGGGAAAATGGTACACCGACGCCTTCTACACGGCGGCGTTTTGGCTCCACAAGAACCACCCCAAGACGCTAGTTTGCAACATCGATTCCTTTTCCACTCCGTTAGGGAATCTTTGGGAACTTATTGATATTCTCTACCGCCTTCTCGGAGAACACGCGGTTATGGATCTCTTCCTGAAGCGCTTGGAGTCTGATGTTGATAAAATAATGCAGCATAAGCTGCAACTTAAGTCATCCGATTACTTAACGGACGAGGAAGATGAGTTCAAGGAAGACGAAGACGATGAAGATAGTACTTTTGATCCTCATCGTTTCGTTACTGAGGCTGCAGCTTGTTTGGTTACCAAACACCCCACGGCCTCTCATACCGCCCGCTCCGTTCTGCTGTGTGAAAGCATTGCGAAGAGGCTTTTCACACCCAAATCAGATCAATCGTATGAACTGGAAGAGTGGGAGAAGTTTAGGAAATTGGTTTTGGCGCCCTTGCGCAATTATTGGTATCGTCAAGGAATGTTTGACCATCGCTGGAGCTGGGTGTTTGAGAAGCAGAAGTTGTGGCATCTTCAAACCGCAGTTAACAGTGACAGGCAGAGGAGCTATGAGGTTGAGAAGTATTTGGAGGAGGTGAAAGTAGCAGCAGCAAGAGGAGGAGGCGGCATTGGCATAATAAAGCCGGATGCTTTGGTTCTAGGGGAGATCATAAAATATGTATGCTATGCGGATTTCAGGGAAGTGGTTGAGCTTCAGTGGAAGGCAATGGGTTTGGGGAACTTTAAAAACTGCTTGGCAGTGTGTTGTCTCACTGATATCCTGGGCAATGGCAGAGCATGGGCTATGAGTTTGGGACTTGTGGTGTCTGAACTGAGTGAAGAGCCGGTATGGAAAGGAAAGGTGATCACTTTCGGTGATTCCCAATATGAGCTGCTGCTGCATTCGATACAAGGCGATGATCTCAAATCCAAGGCCAAGTTTATGATGAGGACAAACAAAGATTTCAGCATAGCTAATTTTCCAGAGGCGTGTGATTTGATTCTGGAAGTGGCTGTGAATGAGAACTTAAAGCCAGAGCAGATGGTCAAGAAGGTGTTTGTGTTCACCGACTTTTCATGCCGTGGTATCGACTGGAAGCCTAGTTATGAGGCAGTATTCTTGGACAATGGTGGAGAAATTGGCGCGCACCAACTCATGGAAGCAGCCATTGCTGACAAAGAGTATCAAGCTCTCTCTGTGGTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

486

Amino Acids

55.76

Weight (kDa)

5.26

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029072)

Species Orthologous Gene IDs
prunus_persica Prupe.5G199600_v2.0.a1 Prupe.5G201900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 707
AccB1I GGYRCC 1 cut(s) 697
AccB7I CCANNNNNTGG 1 cut(s) 1405
AccBSI CCGCTC 1 cut(s) 594
AccI GTMKAC 1 cut(s) 1452
AccII CGCG 2 cut(s) 377, 1394
AciI CCGC 9 cut(s) 137, 254, 358, 377, 588, 592, 789, 873, 938
AclWI GGATC 4 cut(s) 16, 161, 393, 515
AcuI CTGAAG 2 cut(s) 416, 947
AcyI GRCGYC 2 cut(s) 240, 698
AfaI GTAC 2 cut(s) 233, 514
AfeI AGCGCT 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 1405
AflII CTTAAG 1 cut(s) 446
AgsI TTSAA 4 cut(s) 43, 196, 487, 785
AjnI CCWGG 2 cut(s) 155, 1029
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
AluBI AGCT 9 cut(s) 187, 439, 551, 750, 816, 961, 1141, 1223, 1439
AluI AGCT 9 cut(s) 187, 439, 551, 750, 816, 961, 1141, 1223, 1439
Alw26I GTCTC 1 cut(s) 1022
AlwI GGATC 4 cut(s) 16, 161, 393, 515
Aor51HI AGCGCT 1 cut(s) 401
AoxI GGCC 3 cut(s) 99, 576, 1182
AspLEI GCGC 5 cut(s) 402, 700, 708, 1394, 1396
AspS9I GGNCC 1 cut(s) 159
AsuHPI GGTGA 4 cut(s) 856, 1123, 1136, 1306
AvaII GGWCC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 697
BbsI GAAGAC 3 cut(s) 81, 498, 504
BccI CCATC 2 cut(s) 747, 1285
BceAI ACGGC 3 cut(s) 267, 591, 1314
BciT130I CCWGG 2 cut(s) 157, 1031
BclI TGATCA 1 cut(s) 1113
BcoDI GTCTC 1 cut(s) 1022
BfaI CTAG 4 cut(s) 107, 290, 908, 1350
BfmI CTRYAG 2 cut(s) 15, 546
BfoI RGCGCY 2 cut(s) 403, 701
BfrI CTTAAG 1 cut(s) 446
BmcAI AGTACT 1 cut(s) 514
Bme1390I CCNGG 2 cut(s) 157, 1031
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 161, 266, 699
BmrFI CCNGG 2 cut(s) 157, 1031
BmsI GCATC 2 cut(s) 787, 886
BpiI GAAGAC 3 cut(s) 81, 498, 504
BpmI CTGGAG 2 cut(s) 167, 766
BpuEI CTTGAG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 2 cut(s) 240, 698
BsaJI CCNNGG 4 cut(s) 573, 1030, 1179, 1330
Bsc4I CCNNNNNNNGG 1 cut(s) 1405
Bse118I RCCGGY 1 cut(s) 1093
Bse1I ACTGG 2 cut(s) 666, 1346
Bse3DI GCAATG 4 cut(s) 615, 981, 1042, 1416
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 2 cut(s) 157, 1031
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 4 cut(s) 573, 1030, 1179, 1330
BseGI GGATG 2 cut(s) 452, 901
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 1405
BseMI GCAATG 4 cut(s) 615, 981, 1042, 1416
BseMII CTCAG 2 cut(s) 531, 1073
BseNI ACTGG 2 cut(s) 666, 1346
BsePI GCGCGC 1 cut(s) 1392
BseRI GAGGAG 4 cut(s) 826, 854, 879, 882
BseYI CCCAGC 1 cut(s) 750
Bsh1236I CGCG 2 cut(s) 377, 1394
BshFI GGCC 3 cut(s) 101, 578, 1184
BshNI GGYRCC 1 cut(s) 697
BshVI ATCGAT 1 cut(s) 303
BsiSI CCGG 2 cut(s) 893, 1094
BslFI GGGAC 2 cut(s) 145, 1077
BslI CCNNNNNNNGG 1 cut(s) 1405
BsmAI GTCTC 1 cut(s) 1022
BsmFI GGGAC 2 cut(s) 145, 1077
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 3 cut(s) 101, 578, 1184
Bsp143I GATC 9 cut(s) 21, 31, 166, 385, 520, 646, 915, 1113, 1168
BspACI CCGC 9 cut(s) 137, 254, 358, 377, 588, 592, 789, 873, 938
BspANI GGCC 3 cut(s) 101, 578, 1184
BspCNI CTCAG 2 cut(s) 532, 1074
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 2 cut(s) 377, 1394
BspLI GGNNCC 3 cut(s) 161, 266, 699
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 4 cut(s) 16, 161, 393, 515
BspQI GCTCTTC 1 cut(s) 1083
BspT107I GGYRCC 1 cut(s) 697
BspTI CTTAAG 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 594
BsrDI GCAATG 4 cut(s) 615, 981, 1042, 1416
BsrFI RCCGGY 1 cut(s) 1093
BsrI ACTGG 2 cut(s) 666, 1346
BssAI RCCGGY 1 cut(s) 1093
BssECI CCNNGG 4 cut(s) 573, 1030, 1179, 1330
BssHII GCGCGC 1 cut(s) 1392
BssMI GATC 9 cut(s) 21, 31, 166, 385, 520, 646, 915, 1113, 1168
BssNI GRCGYC 2 cut(s) 240, 698
BssT1I CCWWGG 1 cut(s) 1179
Bst2UI CCWGG 2 cut(s) 157, 1031
Bst4CI ACNGT 2 cut(s) 19, 800
Bst6I CTCTTC 4 cut(s) 395, 617, 660, 1083
BstACI GRCGYC 2 cut(s) 240, 698
BstAFI CTTAAG 1 cut(s) 446
BstAPI GCANNNNNTGC 2 cut(s) 439, 1418
BstC8I GCNNGC 3 cut(s) 99, 592, 1394
BstDEI CTNAG 2 cut(s) 540, 1082
BstDSI CCRYGG 2 cut(s) 573, 1330
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 2 cut(s) 452, 901
BstFNI CGCG 2 cut(s) 377, 1394
BstH2I RGCGCY 2 cut(s) 403, 701
BstHHI GCGC 5 cut(s) 402, 700, 708, 1394, 1396
BstKTI GATC 9 cut(s) 24, 34, 169, 388, 523, 649, 918, 1116, 1171
BstMAI GTCTC 1 cut(s) 1022
BstMBI GATC 9 cut(s) 21, 31, 166, 385, 520, 646, 915, 1113, 1168
BstMWI GCNNNNNNNGC 6 cut(s) 142, 436, 439, 879, 1147, 1418
BstNI CCWGG 2 cut(s) 157, 1031
BstPI GGTNACC 1 cut(s) 559
BstSCI CCNGG 2 cut(s) 155, 1029
BstSFI CTRYAG 2 cut(s) 15, 546
BstUI CGCG 2 cut(s) 377, 1394
BstV2I GAAGAC 3 cut(s) 81, 498, 504
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 3 cut(s) 101, 578, 1184
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 573, 1330
BtgZI GCGATG 2 cut(s) 725, 1179
BtsCI GGATG 2 cut(s) 452, 901
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 5 cut(s) 24, 805, 971, 1014, 1020
Cac8I GCNNGC 3 cut(s) 99, 592, 1394
CfoI GCGC 5 cut(s) 402, 700, 708, 1394, 1396
Cfr10I RCCGGY 1 cut(s) 1093
Cfr13I GGNCC 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 2 cut(s) 248, 295
Csp6I GTAC 2 cut(s) 232, 513
CviAII CATG 3 cut(s) 1047, 1326, 1405
CviQI GTAC 2 cut(s) 232, 513
DdeI CTNAG 2 cut(s) 540, 1082
DinI GGCGCC 1 cut(s) 699
DpnI GATC 9 cut(s) 23, 33, 168, 387, 522, 648, 917, 1115, 1170
DpnII GATC 9 cut(s) 21, 31, 166, 385, 520, 646, 915, 1113, 1168
DraI TTTAAA 1 cut(s) 994
Eam1104I CTCTTC 4 cut(s) 395, 617, 660, 1083
EarI CTCTTC 4 cut(s) 395, 617, 660, 1083
Eco130I CCWWGG 1 cut(s) 1179
Eco147I AGGCCT 1 cut(s) 101
Eco32I GATATC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 159
Eco47III AGCGCT 1 cut(s) 401
Eco57I CTGAAG 2 cut(s) 416, 947
Eco91I GGTNACC 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 155, 1029
EcoRV GATATC 1 cut(s) 1027
EcoT14I CCWWGG 1 cut(s) 1179
EgeI GGCGCC 1 cut(s) 699
EheI GGCGCC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 1179
FaeI CATG 3 cut(s) 1050, 1329, 1408
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 2 cut(s) 145, 1077
FatI CATG 3 cut(s) 1046, 1325, 1404
FauI CCCGC 1 cut(s) 599
FbaI TGATCA 1 cut(s) 1113
FblI GTMKAC 1 cut(s) 1452
FokI GGATG 2 cut(s) 439, 908
FspBI CTAG 4 cut(s) 107, 290, 908, 1350
FspI TGCGCA 1 cut(s) 707
GlaI GCGC 5 cut(s) 401, 699, 707, 1393, 1395
GsaI CCCAGC 1 cut(s) 754
GsuI CTGGAG 2 cut(s) 167, 766
HaeII RGCGCY 2 cut(s) 403, 701
HaeIII GGCC 3 cut(s) 101, 578, 1184
HapII CCGG 2 cut(s) 893, 1094
HgaI GACGC 2 cut(s) 248, 295
HhaI GCGC 5 cut(s) 402, 700, 708, 1394, 1396
Hin1I GRCGYC 2 cut(s) 240, 698
Hin1II CATG 3 cut(s) 1050, 1329, 1408
Hin6I GCGC 5 cut(s) 400, 698, 706, 1392, 1394
HinP1I GCGC 5 cut(s) 400, 698, 706, 1392, 1394
HincII GTYRAC 2 cut(s) 796, 1453
HindII GTYRAC 2 cut(s) 796, 1453
HinfI GANTC 6 cut(s) 110, 305, 328, 407, 1127, 1249
HpaI GTTAAC 1 cut(s) 796
HpaII CCGG 2 cut(s) 893, 1094
HphI GGTGA 4 cut(s) 856, 1123, 1136, 1306
Hpy166II GTNNAC 4 cut(s) 234, 796, 1314, 1453
Hpy188I TCNGA 5 cut(s) 368, 412, 457, 646, 1078
Hpy188III TCNNGA 5 cut(s) 29, 394, 1232, 1253, 1297
Hpy8I GTNNAC 4 cut(s) 234, 796, 1314, 1453
Hpy99I CGWCG 2 cut(s) 83, 242
HpyAV CCTTC 4 cut(s) 253, 371, 964, 1294
HpyCH4III ACNGT 2 cut(s) 19, 800
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 5 cut(s) 297, 430, 442, 548, 1150
HpyF10VI GCNNNNNNNGC 6 cut(s) 142, 436, 439, 879, 1147, 1418
HpyF3I CTNAG 2 cut(s) 540, 1082
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 2 cut(s) 240, 698
Hsp92II CATG 3 cut(s) 1050, 1329, 1408
HspAI GCGC 5 cut(s) 400, 698, 706, 1392, 1394
KasI GGCGCC 1 cut(s) 697
Ksp22I TGATCA 1 cut(s) 1113
KspAI GTTAAC 1 cut(s) 796
Kzo9I GATC 9 cut(s) 21, 31, 166, 385, 520, 646, 915, 1113, 1168
LguI GCTCTTC 1 cut(s) 1083
LmnI GCTCC 4 cut(s) 270, 599, 747, 813
LweI GCATC 2 cut(s) 787, 886
MaeI CTAG 4 cut(s) 107, 290, 908, 1350
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 535, 559, 800
MalI GATC 9 cut(s) 23, 33, 168, 387, 522, 648, 917, 1115, 1170
MboI GATC 9 cut(s) 21, 31, 166, 385, 520, 646, 915, 1113, 1168
MflI RGATCY 1 cut(s) 385
MluCI AATT 4 cut(s) 686, 709, 1225, 1386
Mly113I GGCGCC 1 cut(s) 698
MlyI GAGTC 1 cut(s) 416
MseI TTAA 6 cut(s) 126, 447, 464, 795, 993, 1277
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 2 cut(s) 893, 1094
MspR9I CCNGG 2 cut(s) 157, 1031
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 2 cut(s) 157, 1031
MvnI CGCG 2 cut(s) 377, 1394
MwoI GCNNNNNNNGC 6 cut(s) 142, 436, 439, 879, 1147, 1418
NarI GGCGCC 1 cut(s) 698
NdeII GATC 9 cut(s) 21, 31, 166, 385, 520, 646, 915, 1113, 1168
NlaIII CATG 3 cut(s) 1050, 1329, 1408
NlaIV GGNNCC 3 cut(s) 161, 266, 699
NmuCI GTSAC 1 cut(s) 800
NsbI TGCGCA 1 cut(s) 707
PauI GCGCGC 1 cut(s) 1392
PceI AGGCCT 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 1083
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 1 cut(s) 1150
PfeI GAWTC 5 cut(s) 110, 305, 328, 1127, 1249
PflMI CCANNNNNTGG 1 cut(s) 1405
PleI GAGTC 1 cut(s) 415
PluTI GGCGCC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 155, 1029
PspEI GGTNACC 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 750
PspGI CCWGG 2 cut(s) 155, 1029
PspN4I GGNNCC 3 cut(s) 161, 266, 699
PspPI GGNCC 1 cut(s) 159
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 385
PteI GCGCGC 1 cut(s) 1392
RsaI GTAC 2 cut(s) 233, 514
RsaNI GTAC 2 cut(s) 232, 513
SalI GTCGAC 1 cut(s) 1451
SapI GCTCTTC 1 cut(s) 1083
SaqAI TTAA 6 cut(s) 126, 447, 464, 795, 993, 1277
Sau3AI GATC 9 cut(s) 21, 31, 166, 385, 520, 646, 915, 1113, 1168
Sau96I GGNCC 1 cut(s) 159
ScaI AGTACT 1 cut(s) 514
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 157, 1031
SfaNI GCATC 2 cut(s) 787, 886
SfcI CTRYAG 2 cut(s) 15, 546
SfoI GGCGCC 1 cut(s) 699
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 182, 446
SmoI CTYRAG 2 cut(s) 182, 446
Sse9I AATT 4 cut(s) 686, 709, 1225, 1386
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 9 cut(s) 137, 254, 358, 377, 588, 592, 789, 873, 938
SspDI GGCGCC 1 cut(s) 697
SspMI CTAG 4 cut(s) 107, 290, 908, 1350
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 155, 1029
StyI CCWWGG 1 cut(s) 1179
TaaI ACNGT 2 cut(s) 19, 800
TaiI ACGT 1 cut(s) 48
TaqI TCGA 4 cut(s) 303, 1154, 1338, 1452
TasI AATT 4 cut(s) 686, 709, 1225, 1386
TatI WGTACW 1 cut(s) 512
TauI GCSGC 3 cut(s) 139, 257, 876
TfiI GAWTC 5 cut(s) 110, 305, 328, 1127, 1249
Tru1I TTAA 6 cut(s) 126, 447, 464, 795, 993, 1277
Tru9I TTAA 6 cut(s) 126, 447, 464, 795, 993, 1277
TscAI CASTG 5 cut(s) 24, 805, 971, 1014, 1027
TseFI GTSAC 1 cut(s) 800
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 4 cut(s) 206, 519, 672, 1314
TspGWI ACGGA 4 cut(s) 14, 309, 482, 586
TspRI CASTG 5 cut(s) 24, 805, 971, 1014, 1027
Van91I CCANNNNNTGG 1 cut(s) 1405
Vha464I CTTAAG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 1452
XspI CTAG 4 cut(s) 107, 290, 908, 1350
ZrmI AGTACT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.