Prupe.5G201900_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0029072
Physical Location & Seq
Reverse (-)
16283178 .. 16284155
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G201900.1

Sequence Viewer

Length: 873 bp
ATGAGCAAAGTTTTGTTCAGAGAAACATCTATTTCTCATGCCGCCCGCTCCATTCTGCTGTGTGAAAGCATTGCGAAGAGGCTTTTCACACCCAAATCAGATCAATTGTATGAACTGGAAGAGTGGGAGAAGTTTAGGAAATTGGTTTTGGCGCCCTTGCGCAATTATTGGTATCGTCAAGGAATGTTTGACCATCGCTGGAGCTGGGTGTTTGAGAAGCAGAAGTTGTGGCATCTTCAAACCGCAGTTAACAGTGACAGGCAGAGGAGCTATGAGGTTGAGAAGTATTTGGAGGAGGTGAAAGTAGCAGCAGCAAGAGGAGGAGGCGGCATTGGCATAATAAAGCCGGATGCTTTGGTTCTAGGGGAGATCATAAAATATGTATGCTATGCGGATTTCGGGGAAGTGGTTTCAGTGGAAGGCAATGGTGGAGGACATAAAACAGCAGCAAAAGCAGGAGCATGGGCTATGAGTTTGGGACTTGTGGTGTCTGAACTGAGTGAAGAGCCGGTATGGAAAGGAAAGGTGATCACTTTCGGTGATTCCCAATATGAGCTGCTGCTGCATTCGATACAAGGCGATGATCTCAAATCCAAGGCCAAGTTTATGATGAGGACAAACAAAGATTTCAGCATAGCTAATTTTCCAGAGGCGTGTGATTTGATTCTGGAAGTGGCTGTGAATGAGAACTTAAAGCCAGAGCAGATGGTCAAGAAGGTGTTTGTGTTCACCGACTTTTCATGCCGTGGTATCGACTGGAAGTCTAGTTATGAGGCAGTATTCTTGGACAATGGTGGAGAAATTGGCCCGCACCAACTCATGGAAGCAGCCATTGCTGACAAAGAGTATCAAGCTCTCTCTGTGGTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

291

Amino Acids

32.83

Weight (kDa)

5.8

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029072)

Species Orthologous Gene IDs
prunus_persica Prupe.5G199600_v2.0.a1 Prupe.5G201900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 151
AccB7I CCANNNNNTGG 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 867
AciI CCGC 6 cut(s) 42, 46, 243, 327, 392, 809
AcyI GRCGYC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 820
AgsI TTSAA 1 cut(s) 239
AhdI GACNNNNNGTC 1 cut(s) 760
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 5 cut(s) 204, 270, 556, 638, 854
AluI AGCT 5 cut(s) 204, 270, 556, 638, 854
AoxI GGCC 2 cut(s) 597, 805
ApeKI GCWGC 7 cut(s) 308, 311, 446, 556, 559, 562, 827
AspLEI GCGC 2 cut(s) 154, 162
AspS9I GGNCC 1 cut(s) 806
AsuHPI GGTGA 4 cut(s) 310, 538, 551, 721
BanI GGYRCC 1 cut(s) 151
BbvI GCAGC 7 cut(s) 320, 323, 458, 543, 546, 549, 839
BccI CCATC 2 cut(s) 201, 700
BceAI ACGGC 1 cut(s) 729
BclI TGATCA 1 cut(s) 528
BfaI CTAG 2 cut(s) 362, 765
BfoI RGCGCY 1 cut(s) 155
BisI GCNGC 9 cut(s) 42, 309, 312, 328, 447, 557, 560, 563, 828
BlsI GCNGC 9 cut(s) 43, 310, 313, 329, 448, 558, 561, 564, 829
BmeRI GACNNNNNGTC 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 806
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 2 cut(s) 241, 340
BpmI CTGGAG 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 594, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 2 cut(s) 120, 761
Bse3DI GCAATG 3 cut(s) 69, 430, 831
BseDI CCNNGG 2 cut(s) 594, 745
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMI GCAATG 3 cut(s) 69, 430, 831
BseMII CTCAG 1 cut(s) 488
BseNI ACTGG 2 cut(s) 120, 761
BseRI GAGGAG 4 cut(s) 280, 308, 333, 336
BseXI GCAGC 7 cut(s) 320, 323, 458, 543, 546, 549, 839
BseYI CCCAGC 1 cut(s) 204
BshFI GGCC 2 cut(s) 599, 807
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 347, 509
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 820
BsmFI GGGAC 1 cut(s) 492
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 2 cut(s) 599, 807
Bsp143I GATC 4 cut(s) 100, 369, 528, 583
BspACI CCGC 6 cut(s) 42, 46, 243, 327, 392, 809
BspANI GGCC 2 cut(s) 599, 807
BspCNI CTCAG 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 498
BspT107I GGYRCC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 48
BsrDI GCAATG 3 cut(s) 69, 430, 831
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 2 cut(s) 120, 761
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 594, 745
BssMI GATC 4 cut(s) 100, 369, 528, 583
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 594
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 3 cut(s) 71, 114, 498
BstACI GRCGYC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 833
BstC8I GCNNGC 2 cut(s) 46, 809
BstDEI CTNAG 1 cut(s) 497
BstDSI CCRYGG 1 cut(s) 745
BstF5I GGATG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 2 cut(s) 154, 162
BstKTI GATC 4 cut(s) 103, 372, 531, 586
BstMBI GATC 4 cut(s) 100, 369, 528, 583
BstMWI GCNNNNNNNGC 4 cut(s) 333, 452, 562, 833
BstV1I GCAGC 7 cut(s) 320, 323, 458, 543, 546, 549, 839
BsuRI GGCC 2 cut(s) 599, 807
BtgI CCRYGG 1 cut(s) 745
BtgZI GCGATG 2 cut(s) 179, 594
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 259, 420
Cac8I GCNNGC 2 cut(s) 46, 809
CfoI GCGC 2 cut(s) 154, 162
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 806
CviAII CATG 4 cut(s) 38, 462, 741, 820
DdeI CTNAG 1 cut(s) 497
DinI GGCGCC 1 cut(s) 153
DpnI GATC 4 cut(s) 102, 371, 530, 585
DpnII GATC 4 cut(s) 100, 369, 528, 583
DriI GACNNNNNGTC 1 cut(s) 760
Eam1104I CTCTTC 3 cut(s) 71, 114, 498
Eam1105I GACNNNNNGTC 1 cut(s) 760
EarI CTCTTC 3 cut(s) 71, 114, 498
Eco130I CCWWGG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 594
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 4 cut(s) 41, 465, 744, 823
FaqI GGGAC 1 cut(s) 492
FatI CATG 4 cut(s) 37, 461, 740, 819
FauI CCCGC 2 cut(s) 53, 816
FbaI TGATCA 1 cut(s) 528
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 9 cut(s) 42, 309, 312, 328, 447, 557, 560, 563, 828
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 9 cut(s) 42, 309, 312, 328, 447, 557, 560, 563, 828
FspBI CTAG 2 cut(s) 362, 765
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 2 cut(s) 153, 161
GluI GCNGC 9 cut(s) 42, 309, 312, 328, 447, 557, 560, 563, 828
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 2 cut(s) 599, 807
HapII CCGG 2 cut(s) 347, 509
HhaI GCGC 2 cut(s) 154, 162
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 4 cut(s) 41, 465, 744, 823
Hin6I GCGC 2 cut(s) 152, 160
HinP1I GCGC 2 cut(s) 152, 160
HincII GTYRAC 2 cut(s) 250, 868
HindII GTYRAC 2 cut(s) 250, 868
HinfI GANTC 2 cut(s) 542, 664
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 2 cut(s) 347, 509
HphI GGTGA 4 cut(s) 310, 538, 551, 721
Hpy166II GTNNAC 3 cut(s) 250, 729, 868
Hpy188I TCNGA 3 cut(s) 20, 100, 493
Hpy188III TCNNGA 3 cut(s) 647, 668, 712
Hpy8I GTNNAC 3 cut(s) 250, 729, 868
HpyAV CCTTC 2 cut(s) 413, 709
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 565
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 452, 562, 833
HpyF3I CTNAG 1 cut(s) 497
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 4 cut(s) 41, 465, 744, 823
HspAI GCGC 2 cut(s) 152, 160
KasI GGCGCC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 528
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 100, 369, 528, 583
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 4 cut(s) 53, 201, 267, 458
Lsp1109I GCAGC 7 cut(s) 320, 323, 458, 543, 546, 549, 839
LweI GCATC 2 cut(s) 241, 340
MaeI CTAG 2 cut(s) 362, 765
MaeIII GTNAC 1 cut(s) 254
MalI GATC 4 cut(s) 102, 371, 530, 585
MbiI CCGCTC 1 cut(s) 48
MboI GATC 4 cut(s) 100, 369, 528, 583
MboII GAAGA 4 cut(s) 88, 131, 227, 515
MfeI CAATTG 1 cut(s) 104
MluCI AATT 5 cut(s) 104, 140, 163, 640, 801
Mly113I GGCGCC 1 cut(s) 152
MseI TTAA 2 cut(s) 249, 692
MspI CCGG 2 cut(s) 347, 509
MunI CAATTG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 4 cut(s) 333, 452, 562, 833
NarI GGCGCC 1 cut(s) 152
NdeII GATC 4 cut(s) 100, 369, 528, 583
NlaIII CATG 4 cut(s) 41, 465, 744, 823
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 254
NsbI TGCGCA 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 498
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 542, 664
PflMI CCANNNNNTGG 1 cut(s) 820
PkrI GCNGC 9 cut(s) 43, 310, 313, 329, 448, 558, 561, 564, 829
PluTI GGCGCC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 806
SalI GTCGAC 1 cut(s) 866
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 2 cut(s) 249, 692
SatI GCNGC 9 cut(s) 42, 309, 312, 328, 447, 557, 560, 563, 828
Sau3AI GATC 4 cut(s) 100, 369, 528, 583
Sau96I GGNCC 1 cut(s) 806
SetI ASST 9 cut(s) 206, 272, 279, 300, 528, 558, 640, 720, 856
SfaNI GCATC 2 cut(s) 241, 340
SfoI GGCGCC 1 cut(s) 153
Sse9I AATT 5 cut(s) 104, 140, 163, 640, 801
SsiI CCGC 6 cut(s) 42, 46, 243, 327, 392, 809
SspDI GGCGCC 1 cut(s) 151
SspMI CTAG 2 cut(s) 362, 765
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 569, 753, 867
TasI AATT 5 cut(s) 104, 140, 163, 640, 801
TauI GCSGC 2 cut(s) 44, 330
TfiI GAWTC 2 cut(s) 542, 664
Tru1I TTAA 2 cut(s) 249, 692
Tru9I TTAA 2 cut(s) 249, 692
TscAI CASTG 2 cut(s) 259, 420
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 7 cut(s) 308, 311, 446, 556, 559, 562, 827
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 126, 729
TspRI CASTG 2 cut(s) 259, 420
Van91I CCANNNNNTGG 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 2 cut(s) 362, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.