Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0024156

Physical Location & Seq

Genomic Coordinates Forward (+)

16295397 .. 16299811

Gene Structure 4415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G202300.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAAATTGATTTTCCCTCAAATCCATTCCGTGAACCAAACGGGGTCATAGAGCCACTACACATAGAAGTGATAGGGGAGATAGTGGATCTCCCTAAGGAGTGTCCATTAATGGTGTCGTGGTCCCACCTTCTCCATAAACGCTTGAATGCAAACACAGTTCCCAATTTTGGTGCATACATGGAAATTTTGGGGAATGCGACTGATGAAAATTTCATACAACAGCCTTATCAGAGGCTTAGCCATACTCTTCTAGGGGAGGGTTATGAGCGTTATGCCCCTCAGCTGGCTAAGGCATGCTCAATCGCTCTCTGCATCAATTATCACACAGTCGTCCCTCACAAACCAAACAACTATGCTAGACAGTTTGGTTTTGAGAATATAAACCTAGATTCGATTCCAGAGCTTCCTGATGTAGTGGTTGAAGTTAGGCCAAATCATTTGGCCCGTGGGCTCATGGGCCGATGGGGGCCCGTCCGGCCCATTGAAAAAAAGCCCAGCTCGGCCCGTTATGGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

174

Amino Acids

19.61

Weight (kDa)

6.15

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024156)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27420
prunus_persica	Prupe.5G202300_v2.0.a1 Prupe.6G357900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	186, 211
AfiI	CCNNNNNNNGG	3 cut(s)	170, 286, 513
AgsI	TTSAA	3 cut(s)	148, 425, 488
AluBI	AGCT	3 cut(s)	286, 406, 501
AluI	AGCT	3 cut(s)	286, 406, 501
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	6 cut(s)	431, 444, 460, 470, 479, 504
ApaI	GGGCCC	1 cut(s)	474
ApoI	RAATTY	2 cut(s)	186, 211
AseI	ATTAAT	1 cut(s)	110
AspS9I	GGNCC	7 cut(s)	123, 445, 460, 470, 471, 480, 505
AvaII	GGWCC	1 cut(s)	123
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	474
BanII	GRGCYC	2 cut(s)	456, 474
BbvCI	CCTCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	459
BfaI	CTAG	3 cut(s)	254, 360, 389
BglI	GCCNNNNNGGC	1 cut(s)	478
BlpI	GCTNAGC	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	7 cut(s)	123, 445, 460, 470, 471, 480, 505
BmiI	GGNNCC	3 cut(s)	125, 471, 472
BmsI	GCATC	1 cut(s)	324
Bpu10I	CCTNAGC	2 cut(s)	282, 291
Bpu1102I	GCTNAGC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 286, 513
Bse21I	CCTNAGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	448
BseLI	CCNNNNNNNGG	3 cut(s)	170, 286, 513
BseMII	CTCAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	474
BseYI	CCCAGC	1 cut(s)	497
BshFI	GGCC	6 cut(s)	433, 446, 462, 472, 481, 506
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	2 cut(s)	109, 320
BslI	CCNNNNNNNGG	3 cut(s)	170, 286, 513
BsmFI	GGGAC	2 cut(s)	109, 320
BsmI	GAATGC	2 cut(s)	154, 202
BsnI	GGCC	6 cut(s)	433, 446, 462, 472, 481, 506
Bsp120I	GGGCCC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	456, 474
Bsp143I	GATC	1 cut(s)	88
Bsp1720I	GCTNAGC	1 cut(s)	239
BspANI	GGCC	6 cut(s)	433, 446, 462, 472, 481, 506
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	3 cut(s)	125, 471, 472
BspPI	GGATC	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	160, 331, 366
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	288, 298
BstDEI	CTNAG	4 cut(s)	96, 239, 282, 291
BstDSI	CCRYGG	1 cut(s)	448
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNSI	RCATGY	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	6 cut(s)	433, 446, 462, 472, 481, 506
BtgI	CCRYGG	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	288, 298
Cfr13I	GGNCC	7 cut(s)	123, 445, 460, 470, 471, 480, 505
CviAII	CATG	3 cut(s)	181, 297, 457
DdeI	CTNAG	4 cut(s)	96, 239, 282, 291
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	456, 474
Eco47I	GGWCC	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT38I	GRGCYC	2 cut(s)	456, 474
FaeI	CATG	3 cut(s)	184, 300, 460
FaqI	GGGAC	2 cut(s)	109, 320
FatI	CATG	3 cut(s)	180, 296, 456
FriOI	GRGCYC	2 cut(s)	456, 474
FspBI	CTAG	3 cut(s)	254, 360, 389
GsaI	CCCAGC	1 cut(s)	501
HaeIII	GGCC	6 cut(s)	433, 446, 462, 472, 481, 506
HapII	CCGG	1 cut(s)	478
Hin1II	CATG	3 cut(s)	184, 300, 460
HinfI	GANTC	2 cut(s)	392, 397
HpaII	CCGG	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	401, 410
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	3 cut(s)	160, 331, 366
HpyCH4V	TGCA	3 cut(s)	152, 176, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	4 cut(s)	96, 239, 282, 291
Hsp92II	CATG	3 cut(s)	184, 300, 460
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	5 cut(s)	272, 414, 423, 491, 511
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	3 cut(s)	254, 360, 389
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	242
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	2 cut(s)	456, 474
MluCI	AATT	5 cut(s)	6, 166, 186, 211, 319
MnlI	CCTC	5 cut(s)	28, 228, 253, 291, 348
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	478
Mva1269I	GAATGC	2 cut(s)	154, 202
MwoI	GCNNNNNNNGC	1 cut(s)	478
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	184, 300, 460
NlaIV	GGNNCC	3 cut(s)	125, 471, 472
NmeAIII	GCCGAG	1 cut(s)	482
NspI	RCATGY	1 cut(s)	300
PaeI	GCATGC	1 cut(s)	300
PctI	GAATGC	2 cut(s)	154, 202
PfeI	GAWTC	2 cut(s)	392, 397
PshBI	ATTAAT	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	497
PspN4I	GGNNCC	3 cut(s)	125, 471, 472
PspOMI	GGGCCC	1 cut(s)	470
PspPI	GGNCC	7 cut(s)	123, 445, 460, 470, 471, 480, 505
PsuI	RGATCY	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	7 cut(s)	123, 445, 460, 470, 471, 480, 505
SduI	GDGCHC	2 cut(s)	456, 474
SetI	ASST	5 cut(s)	132, 288, 390, 408, 503
SfaNI	GCATC	1 cut(s)	324
SfiI	GGCCNNNNNGGCC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	5 cut(s)	6, 166, 186, 211, 319
SspMI	CTAG	3 cut(s)	254, 360, 389
TaaI	ACNGT	3 cut(s)	160, 331, 366
TaqI	TCGA	1 cut(s)	395
TasI	AATT	5 cut(s)	6, 166, 186, 211, 319
TfiI	GAWTC	2 cut(s)	392, 397
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	205, 222
TspGWI	ACGGA	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	123
VspI	ATTAAT	1 cut(s)	110
XapI	RAATTY	2 cut(s)	186, 211
XceI	RCATGY	1 cut(s)	300
XspI	CTAG	3 cut(s)	254, 360, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.