Prupe.5G217500_v2.0.a1

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0024257
Physical Location & Seq
Reverse (-)
17045671 .. 17048847
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G217500.1

Sequence Viewer

Length: 957 bp
ATGGTTTCGGAGGGTGCTAATAGTAATACCCTCATCATTGGGTCAACCGGGTTCATCGGCCGGTTCATTGCAGAAGCTAGCCTTGACTCAGGCCACCCCACCTATCTTCTTATGCGCCCCGCCTCTCCTGGCCTTTCCAAGACCACTCACACTATCGACTCCTTACAGGACAGAGGAGCTATAATCCTAAACGACTTCCTGGAGAAAGTGCTCAAGGAGCACAAGATTGAAGTTGTCATATCAGTGGTGGGTGGTGAAAGAATTTTAGACCAGCTTATTTTGCTAGAAGCCATTAAATCTGCGGGCACTGTTAAGAGGTTTTTGCCATCTGAATTTGGGCATGACATAGACAAAGCTGATCCGGTGGAGCCGGGGCTGAGTATGTACAATGAGAAGAGAAGAGTGAGAAGGGCCATTGAGGCTGCTGGAATTCCCTACACTTACATTTGCTGCAACTCTATTGCTGGTTGGCCTTATCATGACAACATTCACCCCGCCGATGTTCTCCCACCCTTGGATCGCTTCCACATCTACGGTGATGGCACCGTTAAAGCTTACTTCGTGGCGGGTTCGGACATCGGAAAGTTCACGATCAAAACAATCGACGACGTCCGAACAATCAACAAATCTGTTCATTTTCGACCACCAAGCAACCTCTTCAGCATCAACCAGCTTGCTTCCTTGTGGGAGCAATGCATTGGACGTAAACTCCCGAGAGTCACTATTAGCGAGGACGACCTACTTGCTGCTGCTGAAGAAATGCGAATCCCACAAAGCATTGTGGCATCCTTCACCCACGACATTTTCATCAAGGGCTGCCAAGTAAATTATGAGATAGAGAAGCCTAATGACATTGAAGTTTGTTCTCTGTATCCGGACACACCATTTCTGACCGTCGATGAGTGCTTCCAAGAGTTTGCCAAAAGGGCTGCCGTTGATGTTTCAAAATCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
NmrA

Protein Analysis

319

Amino Acids

35.28

Weight (kDa)

5.63

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024257)

Species Orthologous Gene IDs
malus_domestica MD06G1211400.v1.1
prunus_persica Prupe.5G217500_v2.0.a1
pyrus_communis pycom06g18890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 874
AciI CCGC 4 cut(s) 120, 302, 495, 566
AclWI GGATC 2 cut(s) 353, 525
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 3 cut(s) 261, 332, 429
AcuI CTGAAG 2 cut(s) 643, 774
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 514
AgsI TTSAA 3 cut(s) 230, 857, 945
AjnI CCWGG 2 cut(s) 127, 198
AluBI AGCT 6 cut(s) 77, 179, 274, 356, 554, 673
AluI AGCT 6 cut(s) 77, 179, 274, 356, 554, 673
Alw21I GWGCWC 2 cut(s) 213, 222
AlwI GGATC 2 cut(s) 353, 525
Ama87I CYCGRG 1 cut(s) 712
Aor13HI TCCGGA 1 cut(s) 874
AoxI GGCC 5 cut(s) 58, 91, 130, 411, 470
ApeKI GCWGC 6 cut(s) 422, 450, 746, 749, 816, 929
ApoI RAATTY 3 cut(s) 261, 332, 429
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 411
AsuC2I CCSGG 2 cut(s) 49, 372
AsuHPI GGTGA 4 cut(s) 266, 482, 548, 784
AsuNHI GCTAGC 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 542
Bbv12I GWGCWC 2 cut(s) 213, 222
BbvI GCAGC 6 cut(s) 409, 437, 733, 736, 803, 916
BccI CCATC 2 cut(s) 334, 533
BceAI ACGGC 1 cut(s) 917
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BciT130I CCWGG 2 cut(s) 129, 200
BciVI GTATCC 1 cut(s) 882
BcnI CCSGG 2 cut(s) 49, 372
BfaI CTAG 2 cut(s) 78, 284
BfuI GTATCC 1 cut(s) 882
BglI GCCNNNNNGGC 2 cut(s) 419, 926
BisI GCNGC 6 cut(s) 423, 451, 747, 750, 817, 930
BlsI GCNGC 6 cut(s) 424, 452, 748, 751, 818, 931
Bme1390I CCNGG 4 cut(s) 49, 129, 200, 372
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 2 cut(s) 369, 544
BmrFI CCNGG 4 cut(s) 49, 129, 200, 372
BmsI GCATC 2 cut(s) 672, 794
BmtI GCTAGC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 49, 372
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 371, 513
BsaWI WCCGGW 2 cut(s) 361, 874
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse118I RCCGGY 1 cut(s) 60
Bse3DI GCAATG 2 cut(s) 66, 698
BseAI TCCGGA 1 cut(s) 874
BseBI CCWGG 2 cut(s) 129, 200
BseDI CCNNGG 2 cut(s) 371, 513
BseGI GGATG 1 cut(s) 785
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 2 cut(s) 66, 698
BseMII CTCAG 2 cut(s) 102, 368
BseRI GAGGAG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 6 cut(s) 409, 437, 733, 736, 803, 916
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 60, 93, 132, 413, 472
BshNI GGYRCC 1 cut(s) 542
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 2 cut(s) 213, 222
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 5 cut(s) 48, 61, 362, 371, 875
BslI CCNNNNNNNGG 1 cut(s) 514
BsnI GGCC 5 cut(s) 60, 93, 132, 413, 472
BsoBI CYCGRG 1 cut(s) 712
Bsp1286I GDGCHC 3 cut(s) 213, 222, 308
Bsp13I TCCGGA 1 cut(s) 874
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 3 cut(s) 358, 517, 591
BspACI CCGC 4 cut(s) 120, 302, 495, 566
BspANI GGCC 5 cut(s) 60, 93, 132, 413, 472
BspCNI CTCAG 2 cut(s) 101, 369
BspEI TCCGGA 1 cut(s) 874
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 369, 544
BspOI GCTAGC 1 cut(s) 81
BspPI GGATC 2 cut(s) 353, 525
BspT107I GGYRCC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 66, 698
BsrFI RCCGGY 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 371, 513
BssMI GATC 3 cut(s) 358, 517, 591
BssNI GRCGYC 1 cut(s) 609
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 129, 200
Bst4CI ACNGT 4 cut(s) 310, 536, 547, 895
Bst6I CTCTTC 3 cut(s) 389, 394, 662
BstACI GRCGYC 1 cut(s) 609
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 3 cut(s) 79, 304, 675
BstDEI CTNAG 2 cut(s) 88, 377
BstF5I GGATG 1 cut(s) 785
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 3 cut(s) 361, 520, 594
BstMBI GATC 3 cut(s) 358, 517, 591
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 217, 280, 419, 926
BstNI CCWGG 2 cut(s) 129, 200
BstSCI CCNGG 4 cut(s) 47, 127, 198, 370
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 6 cut(s) 409, 437, 733, 736, 803, 916
BstZI CGGCCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 5 cut(s) 60, 93, 132, 413, 472
BtsCI GGATG 1 cut(s) 785
BtsIMutI CAGTG 2 cut(s) 249, 306
Cac8I GCNNGC 3 cut(s) 79, 304, 675
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 411
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 341, 479
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 88, 377
DpnI GATC 3 cut(s) 360, 519, 593
DpnII GATC 3 cut(s) 358, 517, 591
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 3 cut(s) 389, 394, 662
EarI CTCTTC 3 cut(s) 389, 394, 662
EclXI CGGCCG 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 513
Eco52I CGGCCG 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 643, 774
Eco88I CYCGRG 1 cut(s) 712
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 127, 198
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 2 cut(s) 344, 482
FaiI YATR 8 cut(s) 113, 182, 239, 342, 347, 383, 480, 831
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 2 cut(s) 340, 478
FauI CCCGC 4 cut(s) 127, 295, 502, 559
Fnu4HI GCNGC 6 cut(s) 423, 451, 747, 750, 817, 930
FokI GGATG 1 cut(s) 772
Fsp4HI GCNGC 6 cut(s) 423, 451, 747, 750, 817, 930
FspBI CTAG 2 cut(s) 78, 284
GlaI GCGC 1 cut(s) 116
GluI GCNGC 6 cut(s) 423, 451, 747, 750, 817, 930
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 5 cut(s) 60, 93, 132, 413, 472
HapII CCGG 5 cut(s) 48, 61, 362, 371, 875
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 2 cut(s) 344, 482
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 4 cut(s) 86, 158, 717, 765
HpaII CCGG 5 cut(s) 48, 61, 362, 371, 875
HphI GGTGA 4 cut(s) 266, 482, 548, 784
Hpy166II GTNNAC 3 cut(s) 45, 588, 707
Hpy188I TCNGA 6 cut(s) 10, 331, 574, 581, 614, 891
Hpy188III TCNNGA 4 cut(s) 479, 589, 712, 875
Hpy8I GTNNAC 3 cut(s) 45, 588, 707
Hpy99I CGWCG 3 cut(s) 608, 611, 899
HpyAV CCTTC 2 cut(s) 402, 799
HpyCH4III ACNGT 4 cut(s) 310, 536, 547, 895
HpyCH4IV ACGT 2 cut(s) 609, 703
HpyCH4V TGCA 3 cut(s) 71, 453, 696
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 280, 419, 926
HpyF3I CTNAG 2 cut(s) 88, 377
HpySE526I ACGT 2 cut(s) 609, 703
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 2 cut(s) 344, 482
HspAI GCGC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 874
Kzo9I GATC 3 cut(s) 358, 517, 591
LmnI GCTCC 4 cut(s) 176, 217, 367, 688
Lsp1109I GCAGC 6 cut(s) 409, 437, 733, 736, 803, 916
LweI GCATC 2 cut(s) 672, 794
MaeI CTAG 2 cut(s) 78, 284
MaeII ACGT 2 cut(s) 609, 703
MaeIII GTNAC 1 cut(s) 718
MalI GATC 3 cut(s) 360, 519, 593
MboI GATC 3 cut(s) 358, 517, 591
MboII GAAGA 5 cut(s) 98, 406, 411, 649, 767
MhlI GDGCHC 3 cut(s) 213, 222, 308
MluCI AATT 4 cut(s) 261, 332, 429, 826
MlyI GAGTC 3 cut(s) 80, 152, 726
MnlI CCTC 8 cut(s) 4, 41, 133, 167, 309, 412, 665, 724
Mph1103I ATGCAT 1 cut(s) 698
MroI TCCGGA 1 cut(s) 874
MseI TTAA 3 cut(s) 294, 312, 549
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 5 cut(s) 48, 61, 362, 371, 875
MspR9I CCNGG 4 cut(s) 49, 129, 200, 372
MvaI CCWGG 2 cut(s) 129, 200
MwoI GCNNNNNNNGC 4 cut(s) 217, 280, 419, 926
NciI CCSGG 2 cut(s) 49, 372
NdeII GATC 3 cut(s) 358, 517, 591
NheI GCTAGC 1 cut(s) 77
NlaIII CATG 2 cut(s) 344, 482
NlaIV GGNNCC 2 cut(s) 369, 544
NmuCI GTSAC 1 cut(s) 718
NsiI ATGCAT 1 cut(s) 698
PagI TCATGA 1 cut(s) 478
PfeI GAWTC 1 cut(s) 765
PflFI GACNNNGTC 1 cut(s) 608
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 6 cut(s) 424, 452, 748, 751, 818, 931
PleI GAGTC 3 cut(s) 80, 152, 725
PpsI GAGTC 3 cut(s) 80, 152, 725
Psp6I CCWGG 2 cut(s) 127, 198
PspGI CCWGG 2 cut(s) 127, 198
PspN4I GGNNCC 2 cut(s) 369, 544
PspPI GGNCC 1 cut(s) 411
PsyI GACNNNGTC 1 cut(s) 608
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 3 cut(s) 294, 312, 549
SatI GCNGC 6 cut(s) 423, 451, 747, 750, 817, 930
Sau3AI GATC 3 cut(s) 358, 517, 591
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 3 cut(s) 80, 152, 726
ScrFI CCNGG 4 cut(s) 49, 129, 200, 372
SduI GDGCHC 3 cut(s) 213, 222, 308
SfaNI GCATC 2 cut(s) 672, 794
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 4 cut(s) 261, 332, 429, 826
SsiI CCGC 4 cut(s) 120, 302, 495, 566
SspMI CTAG 2 cut(s) 78, 284
StyD4I CCNGG 4 cut(s) 47, 127, 198, 370
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 4 cut(s) 310, 536, 547, 895
TaiI ACGT 2 cut(s) 612, 706
TaqI TCGA 4 cut(s) 156, 603, 640, 897
TasI AATT 4 cut(s) 261, 332, 429, 826
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 1 cut(s) 765
Tru1I TTAA 3 cut(s) 294, 312, 549
Tru9I TTAA 3 cut(s) 294, 312, 549
TscAI CASTG 2 cut(s) 249, 313
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 6 cut(s) 422, 450, 746, 749, 816, 929
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 4 cut(s) 43, 55, 623, 796
TspRI CASTG 2 cut(s) 249, 313
Tth111I GACNNNGTC 1 cut(s) 608
XapI RAATTY 3 cut(s) 261, 332, 429
XspI CTAG 2 cut(s) 78, 284
ZraI GACGTC 1 cut(s) 610
Zsp2I ATGCAT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.