Prupe.6G098900_v2.0.a1

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
6884864 .. 6885760
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G098900.1

Sequence Viewer

Length: 897 bp
ATGGTAAAGCTTCAGCATCAGCCTCTTTTCTCACTCACACTTCTACTTATCTTGCTCTTCCATTGCACCAAAACCTTAGCCCAAGCTCCTGCCGCAGCCCCTGCTGCTGCTCCTGCTGCTCCTGCAGCCCCAGTTGCCCCAGCTGCTCCAATTGCCCCAGCTGCCCCAATTGCCCCAGCTGCCCCATCAATTACAGGGCCAGCAGTTCCAGCACCACCAGCTGATGCCCCTGCACCTCCAGGCCCAACCAACATCACCAAAATCCTTGAAAAAGCAGGTGGCTTCAATGTCTTCATCCGCCTTTTAAAAAGCACCCAAATTGATAGACAGCTCTACAGTCAACTCAACAACTCAAATAGCCAACTCACCGTTTTAGCCCCAACTGACAGTGCCTTCTCAAGGCTCAGCACAGGCTCACTCAACTCTTTGGGCGATGAGCAAAAAGTGCAGCTCTTACAATTCCATCTGATCCCAGATTTTCTCACAATCCAAAACTTTCAAACTCTCAGCAATCCAGTGAGAACCCAAGCTGGAACTGGATTTGAGTATCCACTAAACATTACCACAACAGGCAGTTCAGTCAACATTTCCACTGGCCTTGTGAACACCTCCATTTCAGGCACTGTCTACTCTGATAATCAAATTGCTATTTACAAAGTTAACAGTGTGCTCCAGCCTTATGGTGTTTTTGCTCCCAAGCATCACCAACCGTCACCCGCTCCGGCACCTGCACAAGAGAAGCCTAAGAAGGAGTCTTCATCATCGGATTCTGATGACACTACTCCTGATGTTGCTGAAGTGAAGTCTGGTGCTGTTCCTTGTCTGATCCCCAAGATTAATGCCATTGTCTCCATTGGAGTTGCTGTGGTTGCTGCTGCAGCTCTAAGCTTTTTGTGA
Functional Annotation

Protein Analysis

299

Amino Acids

30.81

Weight (kDa)

7.78

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028994)

Species Orthologous Gene IDs
prunus_persica Prupe.6G098900_v2.0.a1 Prupe.6G099100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 266, 736
Acc36I ACCTGC 2 cut(s) 266, 736
AccB1I GGYRCC 1 cut(s) 724
AccBSI CCGCTC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 627
AciI CCGC 3 cut(s) 93, 298, 717
AclWI GGATC 2 cut(s) 463, 820
AcuI CTGAAG 1 cut(s) 816
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 3 cut(s) 269, 286, 500
AjnI CCWGG 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 1 cut(s) 853
AlwI GGATC 2 cut(s) 463, 820
AlwNI CAGNNNCTG 2 cut(s) 101, 623
AoxI GGCC 3 cut(s) 197, 241, 595
AseI ATTAAT 1 cut(s) 837
AspS9I GGNCC 2 cut(s) 197, 242
AsuHPI GGTGA 4 cut(s) 247, 358, 695, 705
BanI GGYRCC 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 283, 747
Bbv12I GWGCWC 1 cut(s) 672
BccI CCATC 2 cut(s) 193, 471
BciT130I CCWGG 1 cut(s) 240
BciVI GTATCC 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 853
BfmI CTRYAG 3 cut(s) 123, 334, 876
BfuAI ACCTGC 2 cut(s) 266, 736
BfuI GTATCC 1 cut(s) 558
BlpI GCTNAGC 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 197, 242
BmiI GGNNCC 1 cut(s) 726
BmrFI CCNGG 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 3 cut(s) 25, 214, 709
BmuI ACTGGG 1 cut(s) 125
BpiI GAAGAC 2 cut(s) 283, 747
BpmI CTGGAG 2 cut(s) 222, 656
Bpu10I CCTNAGC 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 849, 879
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 4 cut(s) 131, 515, 541, 598
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 418, 520
BseNI ACTGG 4 cut(s) 131, 515, 541, 598
BseYI CCCAGC 3 cut(s) 139, 157, 175
BsgI GTGCAG 3 cut(s) 216, 467, 714
BshFI GGCC 3 cut(s) 199, 243, 597
BshNI GGYRCC 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 672
BsiSI CCGG 1 cut(s) 722
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 853
BsnI GGCC 3 cut(s) 199, 243, 597
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 2 cut(s) 468, 825
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 3 cut(s) 93, 298, 717
BspANI GGCC 3 cut(s) 199, 243, 597
BspCNI CTCAG 2 cut(s) 417, 519
BspLI GGNNCC 1 cut(s) 726
BspMAI CTGCAG 2 cut(s) 127, 880
BspMI ACCTGC 2 cut(s) 266, 736
BspPI GGATC 2 cut(s) 463, 820
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 724
BsrBI CCGCTC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 4 cut(s) 131, 515, 541, 598
BssMI GATC 2 cut(s) 468, 825
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 6 cut(s) 338, 370, 389, 625, 665, 711
Bst6I CTCTTC 1 cut(s) 62
BstAPI GCANNNNNTGC 2 cut(s) 101, 445
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 5 cut(s) 76, 404, 506, 744, 884
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 2 cut(s) 471, 828
BstMAI GTCTC 1 cut(s) 853
BstMBI GATC 2 cut(s) 468, 825
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 3 cut(s) 123, 334, 876
BstV2I GAAGAC 2 cut(s) 283, 747
BstXI CCANNNNNNTGG 1 cut(s) 680
BsuI GTATCC 1 cut(s) 558
BsuRI GGCC 3 cut(s) 199, 243, 597
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 5 cut(s) 394, 522, 591, 621, 670
BveI ACCTGC 2 cut(s) 266, 736
Cac8I GCNNGC 1 cut(s) 201
CaiI CAGNNNCTG 2 cut(s) 101, 623
Cfr13I GGNCC 2 cut(s) 197, 242
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
DdeI CTNAG 5 cut(s) 76, 404, 506, 744, 884
DpnI GATC 2 cut(s) 470, 827
DpnII GATC 2 cut(s) 468, 825
DraI TTTAAA 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 816
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 238
FaiI YATR 1 cut(s) 681
FauI CCCGC 1 cut(s) 724
FblI GTMKAC 1 cut(s) 627
FokI GGATG 1 cut(s) 281
GsaI CCCAGC 3 cut(s) 143, 161, 179
GsuI CTGGAG 2 cut(s) 222, 656
HaeIII GGCC 3 cut(s) 199, 243, 597
HapII CCGG 1 cut(s) 722
HincII GTYRAC 3 cut(s) 341, 583, 661
HindII GTYRAC 3 cut(s) 341, 583, 661
HindIII AAGCTT 2 cut(s) 8, 886
HinfI GANTC 2 cut(s) 752, 767
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 1 cut(s) 722
HphI GGTGA 4 cut(s) 247, 358, 695, 705
Hpy166II GTNNAC 5 cut(s) 341, 583, 604, 628, 661
Hpy188I TCNGA 5 cut(s) 468, 634, 766, 772, 825
Hpy188III TCNNGA 1 cut(s) 785
Hpy8I GTNNAC 5 cut(s) 341, 583, 604, 628, 661
HpyAV CCTTC 2 cut(s) 403, 742
HpyCH4III ACNGT 6 cut(s) 338, 370, 389, 625, 665, 711
HpyCH4V TGCA 6 cut(s) 66, 125, 233, 448, 731, 878
HpyF3I CTNAG 5 cut(s) 76, 404, 506, 744, 884
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 2 cut(s) 468, 825
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 7 cut(s) 91, 115, 124, 151, 675, 697, 724
LweI GCATC 3 cut(s) 25, 214, 709
MaeIII GTNAC 1 cut(s) 711
MalI GATC 2 cut(s) 470, 827
MbiI CCGCTC 1 cut(s) 719
MboI GATC 2 cut(s) 468, 825
MboII GAAGA 3 cut(s) 49, 283, 747
MfeI CAATTG 2 cut(s) 150, 168
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 6 cut(s) 150, 168, 189, 318, 458, 642
MlyI GAGTC 1 cut(s) 761
MnlI CCTC 3 cut(s) 33, 246, 619
MseI TTAA 3 cut(s) 305, 660, 837
MspA1I CMGCKG 4 cut(s) 143, 161, 179, 221
MspI CCGG 1 cut(s) 722
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 2 cut(s) 150, 168
MvaI CCWGG 1 cut(s) 240
NdeII GATC 2 cut(s) 468, 825
NlaIV GGNNCC 1 cut(s) 726
NmuCI GTSAC 1 cut(s) 711
PaqCI CACCTGC 2 cut(s) 266, 736
PciSI GCTCTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 767
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
PshBI ATTAAT 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 238
PspFI CCCAGC 3 cut(s) 139, 157, 175
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 726
PspPI GGNCC 2 cut(s) 197, 242
PstI CTGCAG 2 cut(s) 127, 880
PstNI CAGNNNCTG 2 cut(s) 101, 623
PvuII CAGCTG 4 cut(s) 143, 161, 179, 221
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 3 cut(s) 305, 660, 837
Sau3AI GATC 2 cut(s) 468, 825
Sau96I GGNCC 2 cut(s) 197, 242
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 3 cut(s) 25, 214, 709
SfcI CTRYAG 3 cut(s) 123, 334, 876
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 6 cut(s) 150, 168, 189, 318, 458, 642
SsiI CCGC 3 cut(s) 93, 298, 717
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 6 cut(s) 338, 370, 389, 625, 665, 711
TasI AATT 6 cut(s) 150, 168, 189, 318, 458, 642
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 3 cut(s) 305, 660, 837
Tru9I TTAA 3 cut(s) 305, 660, 837
TscAI CASTG 5 cut(s) 394, 522, 598, 628, 670
TseFI GTSAC 1 cut(s) 711
Tsp45I GTSAC 1 cut(s) 711
TspDTI ATGAA 2 cut(s) 283, 747
TspRI CASTG 5 cut(s) 394, 522, 598, 628, 670
VspI ATTAAT 1 cut(s) 837
XagI CCTNNNNNAGG 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XmiI GTMKAC 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.