Prupe.6G104500_v2.0.a1

Belongs to the PAL histidase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
7362424 .. 7363182
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G104500.1

Sequence Viewer

Length: 669 bp
ATGGCAGCTTACTGTTCAGAACTTCATGCAGAGCAGCACAACCAAGATGTGAAGTCATTGGGTTTAATTTCATCGACAAAAACAGCTGAAGCAGTTGAAGTCTTAAAGCTAATGGCCTCAAACTATTTGGTTGCACTTTGCCAGGCTATAGACTTGAGAAATTTGGAGGAGAACTCGAAGAACAGTGTTGAGAATGCAATTAGCCAAGTGGCTAAAAGGGTTCTAACTTTTGGAGTGACTGGGGAGCTTCAGCCGTCAAGGTTTTGTGAGAAAGATTTGCTCGAAGTTATCGACGATGAACATGTTTTTGCCTACATTGATGATCCATGTAGTGCAGGCTCTCTCCTTATGCAGAAACTGAGGCACGTCTTGGTTGATCATGCACTGGCAAACAATGATGACTGGACAAATCCAAATGCTTCAATCTTCTTGAAGATAGGTGCTTTTGAGCAAGAATTGAAGACTCTTTTGCCTAAAGAAGTTGAAGAGGCTAGTTTTATTTTTCATAATGGTTATGCATCCATTCCAGGATCAAGAGCTGCAGAGAACATCGGGCCACCAGGAGAGGACTGTGACAAAGTGTTTTCGGCAATTTGCGACGGTAAGGTCATCGATTCACTCCTGCATTGTCTTGAGGAATGGGATGGCAGTCCTCTTCCAATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

223

Amino Acids

24.36

Weight (kDa)

4.62

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028491)

Species Orthologous Gene IDs
malus_domestica MD03G1121500.v1.1
prunus_persica Prupe.6G104500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
AclWI GGATC 2 cut(s) 317, 538
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 2 cut(s) 108, 233
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 5 cut(s) 98, 423, 433, 460, 485
AjiI CACGTC 1 cut(s) 367
AjnI CCWGG 3 cut(s) 141, 526, 559
AluBI AGCT 5 cut(s) 8, 86, 109, 247, 539
AluI AGCT 5 cut(s) 8, 86, 109, 247, 539
AlwI GGATC 2 cut(s) 317, 538
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 2 cut(s) 114, 554
ApeKI GCWGC 3 cut(s) 5, 34, 539
ApoI RAATTY 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 17, 46, 526
BccI CCATC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 3 cut(s) 143, 528, 561
BclI TGATCA 1 cut(s) 376
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 2 cut(s) 147, 540
BisI GCNGC 3 cut(s) 6, 35, 540
BlsI GCNGC 3 cut(s) 7, 36, 541
Bme1390I CCNGG 3 cut(s) 143, 528, 561
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 554
BmrFI CCNGG 3 cut(s) 143, 528, 561
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 527
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 467
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 2 cut(s) 175, 653
Bsa29I ATCGAT 1 cut(s) 612
Bse1I ACTGG 3 cut(s) 244, 390, 407
BseBI CCWGG 3 cut(s) 143, 528, 561
BseCI ATCGAT 1 cut(s) 612
BseGI GGATG 2 cut(s) 518, 649
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 3 cut(s) 244, 390, 407
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 17, 46, 526
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 116, 556
BshVI ATCGAT 1 cut(s) 612
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 2 cut(s) 116, 556
Bsp143I GATC 3 cut(s) 322, 376, 530
BspANI GGCC 2 cut(s) 116, 556
BspCNI CTCAG 1 cut(s) 351
BspDI ATCGAT 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 544
BspPI GGATC 2 cut(s) 317, 538
BsrI ACTGG 3 cut(s) 244, 390, 407
BssMI GATC 3 cut(s) 322, 376, 530
Bst2UI CCWGG 3 cut(s) 143, 528, 561
Bst4CI ACNGT 4 cut(s) 14, 185, 572, 602
Bst6I CTCTTC 2 cut(s) 480, 660
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 2 cut(s) 518, 649
BstKTI GATC 3 cut(s) 325, 379, 533
BstMBI GATC 3 cut(s) 322, 376, 530
BstNI CCWGG 3 cut(s) 143, 528, 561
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 3 cut(s) 141, 526, 559
BstSFI CTRYAG 2 cut(s) 147, 540
BstV1I GCAGC 3 cut(s) 17, 46, 526
BstV2I GAAGAC 1 cut(s) 467
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 2 cut(s) 116, 556
BsuTUI ATCGAT 1 cut(s) 612
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 518, 649
BtsIMutI CAGTG 2 cut(s) 190, 383
Cac8I GCNNGC 1 cut(s) 337
CaiI CAGNNNCTG 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 554
ClaI ATCGAT 1 cut(s) 612
CviAII CATG 4 cut(s) 26, 302, 327, 380
DdeI CTNAG 1 cut(s) 359
DpnI GATC 3 cut(s) 324, 378, 532
DpnII GATC 3 cut(s) 322, 376, 530
DrdI GACNNNNNNGTC 1 cut(s) 605
DseDI GACNNNNNNGTC 1 cut(s) 605
Eam1104I CTCTTC 2 cut(s) 480, 660
EarI CTCTTC 2 cut(s) 480, 660
Eco57I CTGAAG 2 cut(s) 108, 233
EcoRII CCWGG 3 cut(s) 141, 526, 559
EcoT22I ATGCAT 1 cut(s) 520
FaeI CATG 4 cut(s) 29, 305, 330, 383
FaiI YATR 9 cut(s) 27, 149, 303, 328, 350, 381, 507, 516, 664
FatI CATG 4 cut(s) 25, 301, 326, 379
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 3 cut(s) 6, 35, 540
FokI GGATG 2 cut(s) 505, 656
Fsp4HI GCNGC 3 cut(s) 6, 35, 540
FspBI CTAG 1 cut(s) 492
GluI GCNGC 3 cut(s) 6, 35, 540
HaeIII GGCC 2 cut(s) 116, 556
Hin1II CATG 4 cut(s) 29, 305, 330, 383
HinfI GANTC 2 cut(s) 463, 614
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 3 cut(s) 430, 534, 632
Hpy99I CGWCG 2 cut(s) 296, 602
HpyCH4III ACNGT 4 cut(s) 14, 185, 572, 602
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 9 cut(s) 29, 134, 197, 335, 352, 383, 518, 542, 625
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 4 cut(s) 29, 305, 330, 383
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 3 cut(s) 322, 376, 530
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 3 cut(s) 17, 46, 526
LweI GCATC 1 cut(s) 527
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 2 cut(s) 235, 572
MalI GATC 3 cut(s) 324, 378, 532
MboI GATC 3 cut(s) 322, 376, 530
MboII GAAGA 6 cut(s) 190, 418, 445, 472, 497, 647
MluCI AATT 5 cut(s) 66, 160, 198, 455, 591
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 7 cut(s) 127, 160, 354, 481, 559, 628, 663
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 3 cut(s) 65, 104, 667
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 3 cut(s) 143, 528, 561
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 3 cut(s) 143, 528, 561
NdeII GATC 3 cut(s) 322, 376, 530
NlaIII CATG 4 cut(s) 29, 305, 330, 383
NmuCI GTSAC 2 cut(s) 235, 572
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 305
PciI ACATGT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 614
PfoI TCCNGGA 1 cut(s) 526
PkrI GCNGC 3 cut(s) 7, 36, 541
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PscI ACATGT 1 cut(s) 301
Psp6I CCWGG 3 cut(s) 141, 526, 559
PspGI CCWGG 3 cut(s) 141, 526, 559
PspPI GGNCC 1 cut(s) 554
PstI CTGCAG 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 86
SaqAI TTAA 3 cut(s) 65, 104, 667
SatI GCNGC 3 cut(s) 6, 35, 540
Sau3AI GATC 3 cut(s) 322, 376, 530
Sau96I GGNCC 1 cut(s) 554
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 3 cut(s) 143, 528, 561
SetI ASST 9 cut(s) 10, 88, 111, 249, 263, 369, 442, 541, 609
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 2 cut(s) 147, 540
SmlI CTYRAG 2 cut(s) 154, 632
SmoI CTYRAG 2 cut(s) 154, 632
Sse9I AATT 5 cut(s) 66, 160, 198, 455, 591
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 141, 526, 559
TaaI ACNGT 4 cut(s) 14, 185, 572, 602
TaiI ACGT 1 cut(s) 369
TaqI TCGA 5 cut(s) 74, 176, 282, 291, 612
TasI AATT 5 cut(s) 66, 160, 198, 455, 591
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 3 cut(s) 65, 104, 667
Tru9I TTAA 3 cut(s) 65, 104, 667
TscAI CASTG 2 cut(s) 190, 390
TseFI GTSAC 2 cut(s) 235, 572
TseI GCWGC 3 cut(s) 5, 34, 539
Tsp45I GTSAC 2 cut(s) 235, 572
TspDTI ATGAA 4 cut(s) 14, 60, 312, 494
TspRI CASTG 2 cut(s) 190, 390
XapI RAATTY 1 cut(s) 160
XceI RCATGY 1 cut(s) 305
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.