Prupe.6G213000_v2.0.a1

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0024363
Physical Location & Seq
Forward (+)
22113473 .. 22113970
498 bp
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UTR
Exon/CDS
Intron
Prupe.6G213000.1

Sequence Viewer

Length: 498 bp
ATGGGCCGCAAGAAGACTCAAATGCAGTTGATCGAGACTGAAAGTGCTCGGCATGTTGCGTTCTCCAAGCGCCGATCTGGCCTCTTCAAGAAGGCTAGTGAACTCTGCACCATGTGTGCCGTTGAAGTTGCCATTATCATCTTCTCCATTGGAGGGAAGGCATTTTCATTTGGCCACCCTAATGTCCACTTTGTGTTTAACAGGCTTCGTTGTTCTGAGAACCCAGATGCCAGCACCAGCTCTAATGAGGCTGCAGGACAAGATCCAATTCTGCATGATCTTAACAAAACCCACTCTGATCTTATTGAAAATGTGGGGCTTGTGAAGAAACTAGGGAAGAAGATGAGGAGGGCAATAATGGAGAAACCGAAGCCTGACTGGTTTTATGCACCAAGGGAAAGCCTTAGCATGGAGGTTCTATACGAGATGAAGGAGGCTCTAGAAGCCGTACAAGAGAATGTGCGTAGAGACAAGGAAAGGCTTCTAGCGCAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

166

Amino Acids

18.71

Weight (kDa)

9.32

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024363)

Species Orthologous Gene IDs
malus_domestica MD02G1194300.v1.1
prunus_persica Prupe.6G213000_v2.0.a1
pyrus_communis pycom02g15830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 7
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 172
AdeI CACNNNGTG 2 cut(s) 114, 193
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 153, 409
AgsI TTSAA 3 cut(s) 88, 125, 308
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 29, 462
AlwI GGATC 1 cut(s) 257
AoxI GGCC 3 cut(s) 4, 79, 172
ApeKI GCWGC 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 2 cut(s) 72, 490
AspS9I GGNCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 238
BceAI ACGGC 2 cut(s) 104, 431
BcoDI GTCTC 2 cut(s) 29, 462
BfaI CTAG 4 cut(s) 96, 332, 440, 485
BfmI CTRYAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 73
BglI GCCNNNNNGGC 1 cut(s) 78
BisI GCNGC 2 cut(s) 7, 252
BlsI GCNGC 2 cut(s) 8, 253
BmgT120I GGNCC 1 cut(s) 4
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 392
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 409
Bse1I ACTGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 392
BseLI CCNNNNNNNGG 2 cut(s) 153, 409
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 91
BshFI GGCC 3 cut(s) 6, 81, 174
BsiHKAI GWGCWC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 153, 409
BsmAI GTCTC 2 cut(s) 29, 462
BsnI GGCC 3 cut(s) 6, 81, 174
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 5 cut(s) 30, 74, 262, 277, 298
BspACI CCGC 1 cut(s) 7
BspANI GGCC 3 cut(s) 6, 81, 174
BspCNI CTCAG 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 5 cut(s) 30, 74, 262, 277, 298
BssT1I CCWWGG 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 232, 492
BstDEI CTNAG 2 cut(s) 216, 404
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 490
BstKTI GATC 5 cut(s) 33, 77, 265, 280, 301
BstMAI GTCTC 2 cut(s) 29, 462
BstMBI GATC 5 cut(s) 30, 74, 262, 277, 298
BstMWI GCNNNNNNNGC 3 cut(s) 78, 443, 487
BstNSI RCATGY 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 3 cut(s) 6, 81, 174
Cac8I GCNNGC 2 cut(s) 232, 492
CfoI GCGC 2 cut(s) 72, 490
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 449
CviAII CATG 4 cut(s) 53, 112, 275, 409
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 2 cut(s) 216, 404
DpnI GATC 5 cut(s) 32, 76, 264, 279, 300
DpnII GATC 5 cut(s) 30, 74, 262, 277, 298
DraIII CACNNNGTG 2 cut(s) 114, 193
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 4 cut(s) 56, 115, 278, 412
FaiI YATR 6 cut(s) 54, 113, 276, 387, 410, 421
FatI CATG 4 cut(s) 52, 111, 274, 408
Fnu4HI GCNGC 2 cut(s) 7, 252
Fsp4HI GCNGC 2 cut(s) 7, 252
FspBI CTAG 4 cut(s) 96, 332, 440, 485
GlaI GCGC 2 cut(s) 71, 489
GluI GCNGC 2 cut(s) 7, 252
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 3 cut(s) 6, 81, 174
HhaI GCGC 2 cut(s) 72, 490
Hin1II CATG 4 cut(s) 56, 115, 278, 412
Hin6I GCGC 2 cut(s) 70, 488
HinP1I GCGC 2 cut(s) 70, 488
HinfI GANTC 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 101, 187
Hpy188I TCNGA 2 cut(s) 217, 298
Hpy188III TCNNGA 3 cut(s) 34, 88, 440
Hpy8I GTNNAC 2 cut(s) 101, 187
HpyAV CCTTC 3 cut(s) 85, 151, 424
HpyCH4V TGCA 5 cut(s) 25, 108, 254, 274, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 443, 487
HpyF3I CTNAG 2 cut(s) 216, 404
Hsp92II CATG 4 cut(s) 56, 115, 278, 412
HspAI GCGC 2 cut(s) 70, 488
Kzo9I GATC 5 cut(s) 30, 74, 262, 277, 298
LpnPI CCDG 9 cut(s) 63, 187, 237, 240, 244, 250, 364, 387, 476
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 217
MaeI CTAG 4 cut(s) 96, 332, 440, 485
MalI GATC 5 cut(s) 32, 76, 264, 279, 300
MboI GATC 5 cut(s) 30, 74, 262, 277, 298
MboII GAAGA 6 cut(s) 25, 76, 133, 337, 349, 352
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 7 cut(s) 92, 146, 241, 339, 342, 406, 427
Mox20I TGGCCA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 480
MscI TGGCCA 1 cut(s) 174
MseI TTAA 3 cut(s) 198, 282, 496
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 78, 443, 487
NdeII GATC 5 cut(s) 30, 74, 262, 277, 298
NlaIII CATG 4 cut(s) 56, 115, 278, 412
NmeAIII GCCGAG 1 cut(s) 28
NspI RCATGY 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 480
PkrI GCNGC 2 cut(s) 8, 253
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 198, 282, 496
SatI GCNGC 2 cut(s) 7, 252
Sau3AI GATC 5 cut(s) 30, 74, 262, 277, 298
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 49
SetI ASST 2 cut(s) 242, 417
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 1 cut(s) 267
SsiI CCGC 1 cut(s) 7
SspMI CTAG 4 cut(s) 96, 332, 440, 485
StyI CCWWGG 1 cut(s) 392
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 267
TauI GCSGC 1 cut(s) 9
Tru1I TTAA 3 cut(s) 198, 282, 496
Tru9I TTAA 3 cut(s) 198, 282, 496
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 156, 443
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 4 cut(s) 96, 332, 440, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.