Prupe.6G234800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0019297
Physical Location & Seq
Reverse (-)
23616770 .. 23617048
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G234800.1

Sequence Viewer

Length: 279 bp
ATGAAGGTGGTGGCATTCTTTTTGGTTGTGATGTTCATGGCCAGCTATTGCTTGGCAGCAGCGCCAAGGAGGGCTATGTTGGGACGAACGTATGGACAAGAAGAGCAGCCACACCGGCATGTCGAAAGCGGAAAATCCATGGAAAATAGCATTGGAAAGTACCCAGGAAGCAGTTTGGACAACCACAATATCGACAACCACCACAGCATACCTAGACAGCATTACAATGACCCCAATGGCTCTTCTCAAGGAGATGGTGGTGATGGTGGAAATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.03

Weight (kDa)

6.57

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019297)

Species Orthologous Gene IDs
prunus_persica Prupe.6G234800_v2.0.a1
rosa_laevigata RLG00000024309
rosa_multiflora Rmu_co8424623.1_g000001 Rmu_sc0008347.1_g000004
rosa_rugosa Rorug03G0105800
rosa_samantha Rh3AG154700 Rh3BG178800 Rh3CG169400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 1 cut(s) 161
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 56, 59, 106
AspLEI GCGC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 272
BalI TGGCCA 1 cut(s) 41
BbvI GCAGC 3 cut(s) 68, 71, 118
BccI CCATC 2 cut(s) 248, 257
BciT130I CCWGG 1 cut(s) 165
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 115
BisI GCNGC 3 cut(s) 57, 60, 107
BlsI GCNGC 3 cut(s) 58, 61, 108
Bme1390I CCNGG 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 65, 138, 163
Bse118I RCCGGY 1 cut(s) 114
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 65, 138, 163
BseXI GCAGC 3 cut(s) 68, 71, 118
BshFI GGCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 41
BspQI GCTCTTC 2 cut(s) 96, 247
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 65, 138, 163
BssT1I CCWWGG 2 cut(s) 65, 138
Bst2UI CCWGG 1 cut(s) 165
Bst6I CTCTTC 2 cut(s) 96, 247
BstC8I GCNNGC 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 163
BstV1I GCAGC 3 cut(s) 68, 71, 118
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 114
Csp6I GTAC 1 cut(s) 160
CviAII CATG 3 cut(s) 37, 119, 139
CviJI RGCY 5 cut(s) 41, 45, 74, 109, 240
CviKI_1 RGCY 5 cut(s) 41, 45, 74, 109, 240
CviQI GTAC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 96, 247
EarI CTCTTC 2 cut(s) 96, 247
Eco130I CCWWGG 2 cut(s) 65, 138
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 65, 138
ErhI CCWWGG 2 cut(s) 65, 138
FaeI CATG 3 cut(s) 40, 122, 142
FaiI YATR 6 cut(s) 38, 77, 93, 120, 140, 209
FaqI GGGAC 1 cut(s) 96
FatI CATG 3 cut(s) 36, 118, 138
Fnu4HI GCNGC 3 cut(s) 57, 60, 107
Fsp4HI GCNGC 3 cut(s) 57, 60, 107
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 63
GluI GCNGC 3 cut(s) 57, 60, 107
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 115
HhaI GCGC 1 cut(s) 64
Hin1II CATG 3 cut(s) 40, 122, 142
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HpaII CCGG 1 cut(s) 115
HphI GGTGA 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 3 cut(s) 40, 122, 142
HspAI GCGC 1 cut(s) 62
LguI GCTCTTC 2 cut(s) 96, 247
LpnPI CCDG 4 cut(s) 55, 128, 150, 177
Lsp1109I GCAGC 3 cut(s) 68, 71, 118
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 89
MboII GAAGA 2 cut(s) 113, 234
MlsI TGGCCA 1 cut(s) 41
MluNI TGGCCA 1 cut(s) 41
MnlI CCTC 1 cut(s) 63
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MslI CAYNNNNRTG 2 cut(s) 117, 225
Msp20I TGGCCA 1 cut(s) 41
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 115
NcoI CCATGG 1 cut(s) 138
NlaIII CATG 3 cut(s) 40, 122, 142
NspI RCATGY 1 cut(s) 122
PciSI GCTCTTC 2 cut(s) 96, 247
PctI GAATGC 1 cut(s) 14
PkrI GCNGC 3 cut(s) 58, 61, 108
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 117, 225
SapI GCTCTTC 2 cut(s) 96, 247
SatI GCNGC 3 cut(s) 57, 60, 107
ScrFI CCNGG 1 cut(s) 165
SetI ASST 4 cut(s) 9, 47, 92, 214
SmiMI CAYNNNNRTG 2 cut(s) 117, 225
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 65, 138
TaiI ACGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 123, 192
TseI GCWGC 3 cut(s) 56, 59, 106
TspDTI ATGAA 2 cut(s) 17, 25
XceI RCATGY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.