Rh3AG154700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0019297
Physical Location & Seq
Forward (+)
14153406 .. 14154304
899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG154700.1

Sequence Viewer

Length: 276 bp
ATGAAGGTGGTGGCAGTACTATTTTTGGTGTTGATGATTATGGCAAGCTCTTGCTTGGGAGCACCAAGAAGAGCTATGCTGGGAGGAATATATGGACAAGAGCAGAGGCACCACCACGGTGAAAGCACGAAAAATGCCGTGGAGAAGAGCAATGCTAAGTACATGGGAAGCCGCATGTACAACCACCGAATCAACAACCATCACAGCATACCCAGAGAGTATTACAATGATCCAAGTGGTTCTTCTCCAGGAGATGGTGATGGTGGAACTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.02

Weight (kDa)

8.85

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019297)

Species Orthologous Gene IDs
prunus_persica Prupe.6G234800_v2.0.a1
rosa_laevigata RLG00000024309
rosa_multiflora Rmu_co8424623.1_g000001 Rmu_sc0008347.1_g000004
rosa_rugosa Rorug03G0105800
rosa_samantha Rh3AG154700 Rh3BG178800 Rh3CG169400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 254
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 224
AfaI GTAC 3 cut(s) 18, 161, 179
AfiI CCNNNNNNNGG 1 cut(s) 254
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 226, 258
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 2 cut(s) 48, 74
AluI AGCT 2 cut(s) 48, 74
Alw21I GWGCWC 1 cut(s) 64
AlwI GGATC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 131, 269
BanI GGYRCC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 3 cut(s) 207, 248, 254
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 249
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 115, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 115, 138
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 2 cut(s) 64, 140
BspT107I GGYRCC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 115, 138
BssMI GATC 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 64, 140
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 156, 270
BstDSI CCRYGG 2 cut(s) 115, 138
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 247
BtgI CCRYGG 2 cut(s) 115, 138
Cac8I GCNNGC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 17, 160, 178
CviAII CATG 2 cut(s) 163, 175
CviJI RGCY 3 cut(s) 48, 74, 171
CviKI_1 RGCY 3 cut(s) 48, 74, 171
CviQI GTAC 3 cut(s) 17, 160, 178
DdeI CTNAG 2 cut(s) 156, 270
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 64, 140
EarI CTCTTC 2 cut(s) 64, 140
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 166, 178
FaiI YATR 7 cut(s) 41, 77, 91, 93, 164, 176, 209
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 2 cut(s) 162, 174
Fnu4HI GCNGC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 172
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 231
Hin1II CATG 2 cut(s) 166, 178
HinfI GANTC 1 cut(s) 189
HphI GGTGA 2 cut(s) 131, 269
HpyCH4III ACNGT 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 156, 270
Hsp92II CATG 2 cut(s) 166, 178
Kzo9I GATC 1 cut(s) 229
LguI GCTCTTC 2 cut(s) 64, 140
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 4 cut(s) 65, 226, 234, 261
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 3 cut(s) 81, 157, 234
MhlI GDGCHC 1 cut(s) 64
MnlI CCTC 2 cut(s) 77, 99
MslI CAYNNNNRTG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 166, 178
NlaIV GGNNCC 1 cut(s) 110
NspI RCATGY 1 cut(s) 178
OliI CACNNNNGTG 1 cut(s) 117
PciSI GCTCTTC 2 cut(s) 64, 140
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 110
RsaI GTAC 3 cut(s) 18, 161, 179
RsaNI GTAC 3 cut(s) 17, 160, 178
RseI CAYNNNNRTG 1 cut(s) 117
SapI GCTCTTC 2 cut(s) 64, 140
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 64
SetI ASST 3 cut(s) 9, 50, 76
SmiMI CAYNNNNRTG 1 cut(s) 117
SsiI CCGC 1 cut(s) 172
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 119
TatI WGTACW 3 cut(s) 16, 159, 177
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 254
XceI RCATGY 1 cut(s) 178
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.