Prupe.6G242900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0024540
Physical Location & Seq
Forward (+)
24113611 .. 24114358
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G242900.1

Sequence Viewer

Length: 213 bp
ATGGCTCTACCTATTGAACAAGCCAAGCCTTCAAACACAAACAAGGCCAGGCTTCCTCCAAAGAGAGGCCAGATCAAAGTTAAGATAATATCCAGTTTTGTCAAGTTGGTGGTTGGAGTGGCTTCAAGAGTCAGGAGAGGGCTGAGCCGCCATAGAAAGGTGGCAACCCGGGAAGCACAGGCTCCTATGGCGCCTATGCAGCCTGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.76

Weight (kDa)

12.0

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024540)

Species Orthologous Gene IDs
prunus_persica Prupe.6G242900_v2.0.a1
pyrus_communis pycom04g10080 pycom04g10090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 1 cut(s) 148
AcyI GRCGYC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 65, 157
AgsI TTSAA 3 cut(s) 17, 33, 126
AjnI CCWGG 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 2 cut(s) 45, 67
ApeKI GCWGC 1 cut(s) 199
AspLEI GCGC 1 cut(s) 193
AsuC2I CCSGG 2 cut(s) 169, 170
AvaI CYCGRG 1 cut(s) 168
BanI GGYRCC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 49
BcnI CCSGG 2 cut(s) 169, 170
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 2 cut(s) 148, 200
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 2 cut(s) 149, 201
Bme1390I CCNGG 3 cut(s) 49, 169, 170
BmeT110I CYCGRG 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 183, 192
BmrFI CCNGG 3 cut(s) 49, 169, 170
Bpu1102I GCTNAGC 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 169, 170
BsaHI GRCGYC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 157
Bse1I ACTGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 65, 157
BseMII CTCAG 2 cut(s) 134, 195
BseNI ACTGG 1 cut(s) 93
BshFI GGCC 2 cut(s) 47, 69
BshNI GGYRCC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 65, 157
BsnI GGCC 2 cut(s) 47, 69
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 1 cut(s) 72
Bsp1720I GCTNAGC 1 cut(s) 143
BspACI CCGC 1 cut(s) 148
BspANI GGCC 2 cut(s) 47, 69
BspCNI CTCAG 2 cut(s) 135, 196
BspLI GGNNCC 2 cut(s) 183, 192
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 72
BssNI GRCGYC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 143, 204
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 188, 199
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 3 cut(s) 47, 167, 168
BsuRI GGCC 2 cut(s) 47, 69
CfoI GCGC 1 cut(s) 193
Cfr9I CCCGGG 1 cut(s) 168
DdeI CTNAG 2 cut(s) 143, 204
DinI GGCGCC 1 cut(s) 192
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
FaiI YATR 3 cut(s) 153, 188, 197
Fnu4HI GCNGC 2 cut(s) 148, 200
Fsp4HI GCNGC 2 cut(s) 148, 200
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 148, 200
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 2 cut(s) 47, 69
HapII CCGG 1 cut(s) 169
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 191
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 1 cut(s) 129
HpaII CCGG 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 126, 133
HpyAV CCTTC 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 199
HpyF3I CTNAG 2 cut(s) 143, 204
Hsp92I GRCGYC 1 cut(s) 191
HspAI GCGC 1 cut(s) 191
KasI GGCGCC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 34, 61, 83, 106, 118, 164, 182
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
Mly113I GGCGCC 1 cut(s) 191
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 3 cut(s) 59, 66, 131
MseI TTAA 1 cut(s) 81
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 49, 169, 170
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 188, 199
NarI GGCGCC 1 cut(s) 191
NciI CCSGG 2 cut(s) 169, 170
NdeII GATC 1 cut(s) 72
NlaIV GGNNCC 2 cut(s) 183, 192
PkrI GCNGC 2 cut(s) 149, 201
PleI GAGTC 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 183, 192
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 148, 200
Sau3AI GATC 1 cut(s) 72
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 3 cut(s) 49, 169, 170
SetI ASST 2 cut(s) 13, 162
SfoI GGCGCC 1 cut(s) 192
SmaI CCCGGG 1 cut(s) 170
SsiI CCGC 1 cut(s) 148
SspDI GGCGCC 1 cut(s) 190
StyD4I CCNGG 3 cut(s) 47, 167, 168
TauI GCSGC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 199
TspMI CCCGGG 1 cut(s) 168
XmaI CCCGGG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.