pycom04g10090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0024540
Physical Location & Seq
Forward (+)
12843055 .. 12843240
186 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10090.1

Sequence Viewer

Length: 186 bp
ATGGCTCTATCTAGGCTTCCTTCAAAGAGAGGCCGGATCAAAGTTAAGATAGTGTTCAGTCTTGTCAAGTTGATGGTGATAGTAGCTTCGAAAGTCGGGAGAGGGATGAGCCGCCGTCGAAAGGTGGCGACACAGGTTGTGCAGGCGCCTATTCAGCCGGCTAGTGATCAAATTAACCACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.75

Weight (kDa)

12.0

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024540)

Species Orthologous Gene IDs
prunus_persica Prupe.6G242900_v2.0.a1
pyrus_communis pycom04g10080 pycom04g10090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 1 cut(s) 112
AclWI GGATC 1 cut(s) 44
AcvI CACGTG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 121
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 24
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 181
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 1 cut(s) 166
BfaI CTAG 2 cut(s) 12, 162
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 157
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 34, 158
BslI CCNNNNNNNGG 1 cut(s) 121
BsnI GGCC 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 2 cut(s) 36, 166
BspACI CCGC 1 cut(s) 112
BspANI GGCC 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 157
BssMI GATC 2 cut(s) 36, 166
BssNI GRCGYC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 144, 159
BstF5I GGATG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 39, 169
BstMBI GATC 2 cut(s) 36, 166
BstMWI GCNNNNNNNGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 144, 159
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 157
CviJI RGCY 7 cut(s) 5, 16, 33, 86, 111, 157, 161
CviKI_1 RGCY 7 cut(s) 5, 16, 33, 86, 111, 157, 161
DinI GGCGCC 1 cut(s) 147
DpnI GATC 2 cut(s) 38, 168
DpnII GATC 2 cut(s) 36, 166
Eco72I CACGTG 1 cut(s) 181
EgeI GGCGCC 1 cut(s) 147
EheI GGCGCC 1 cut(s) 147
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 112
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 2 cut(s) 12, 162
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 34, 158
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 146
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HpaII CCGG 2 cut(s) 34, 158
HphI GGTGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 146
HspAI GCGC 1 cut(s) 146
KasI GGCGCC 1 cut(s) 145
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 36, 166
LpnPI CCDG 4 cut(s) 47, 119, 128, 171
MaeI CTAG 2 cut(s) 12, 162
MaeII ACGT 1 cut(s) 180
MalI GATC 2 cut(s) 38, 168
MboI GATC 2 cut(s) 36, 166
MluCI AATT 1 cut(s) 171
Mly113I GGCGCC 1 cut(s) 146
MnlI CCTC 2 cut(s) 23, 95
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 2 cut(s) 45, 174
MspI CCGG 2 cut(s) 34, 158
MwoI GCNNNNNNNGC 1 cut(s) 154
NaeI GCCGGC 1 cut(s) 159
NarI GGCGCC 1 cut(s) 146
NdeII GATC 2 cut(s) 36, 166
NgoMIV GCCGGC 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 147
NspV TTCGAA 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 113
PluTI GGCGCC 1 cut(s) 149
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 181
PspCI CACGTG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 147
SaqAI TTAA 2 cut(s) 45, 174
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 2 cut(s) 36, 166
SetI ASST 4 cut(s) 88, 126, 138, 183
SfoI GGCGCC 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 89
SgeI CNNG 9 cut(s) 24, 46, 74, 79, 109, 146, 155, 170, 174
Sse9I AATT 1 cut(s) 171
SsiI CCGC 1 cut(s) 112
SspDI GGCGCC 1 cut(s) 145
SspMI CTAG 2 cut(s) 12, 162
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 89, 118
TasI AATT 1 cut(s) 171
TauI GCSGC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 45, 174
Tru9I TTAA 2 cut(s) 45, 174
XspI CTAG 2 cut(s) 12, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.