Prupe.6G247800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0029012
Physical Location & Seq
Forward (+)
24394521 .. 24395129
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G247800.1

Sequence Viewer

Length: 609 bp
ATGGCAGTAGCCTATGAAAAAATTTCATGGGTGGCCTCTCTGCTTGTGCTACTTTTAGGCTTTGCCTCATGCTCTTCACAGGGTGGTGGTGGTGAATTTACCCACAGAAGCTTGAATTTTTGGAAAGCAGCCAGGGCCCGTGTTCCACCAACTGGACCTAACACTGGAACATCAAGAAAATTCAACTTTGGTACTTTGCCAAAGGGCACTCTAATTCCTCCGTCTTGGCCAAGCAAAAGAACTTCAAGACCTCCCCCTCCTCCTCCTCATCCTTCCAACTTTGATACTTTGCCAAAGTACACTCCAATTCCACCATCAGGGCCTAGCGGAAGAACTTCGGACCCTCCTCCTCCTCCTCCTTTTAACTTTGGTACTTTGCCAAAGTCCACTCCAATTCCACCTCTAGGGCCTAGCAGAAGAACTTCGGACCCTCCTCCTCCTCCTCATCCTTTCAACTTTGGTACTTTACCAAAGTACACTCCAATTCCACCATCAGGGCTTAGCGGAAGAACTTCGAGCCCTCCTCCTCCTTTCAATTTCAGGATGCATTATTCCGGGCCTTCACACGGTCCACCTCGCTATGAGATTCCACCTCCTCCAGCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.63

Weight (kDa)

10.82

Isoelectric Point (pI)

63.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029012)

Species Orthologous Gene IDs
prunus_persica Prupe.6G247800_v2.0.a1
pyrus_communis pycom12g12920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AciI CCGC 2 cut(s) 327, 504
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 4 cut(s) 21, 95, 115, 179
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 5 cut(s) 193, 299, 373, 463, 476
AfiI CCNNNNNNNGG 6 cut(s) 152, 164, 317, 404, 494, 566
AgsI TTSAA 5 cut(s) 115, 184, 246, 454, 535
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
AoxI GGCC 6 cut(s) 33, 135, 227, 320, 407, 557
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 4 cut(s) 21, 95, 115, 179
Asp700I GAANNNNTTC 3 cut(s) 334, 421, 511
AspS9I GGNCC 9 cut(s) 135, 136, 155, 320, 340, 407, 427, 557, 569
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 4 cut(s) 155, 340, 427, 569
BaeGI GKGCMC 2 cut(s) 139, 209
BalI TGGCCA 1 cut(s) 229
BanII GRGCYC 2 cut(s) 139, 521
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 322, 499
BciT130I CCWGG 1 cut(s) 133
BcnI CCSGG 1 cut(s) 556
BfaI CTAG 3 cut(s) 324, 404, 411
BisI GCNGC 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 133, 556
Bme18I GGWCC 4 cut(s) 155, 340, 427, 569
BmgT120I GGNCC 9 cut(s) 135, 136, 155, 320, 340, 407, 427, 557, 569
BmiI GGNNCC 3 cut(s) 137, 342, 429
BmrFI CCNGG 2 cut(s) 133, 556
BmsI GCATC 1 cut(s) 534
BplI GAGNNNNNCTC 2 cut(s) 508, 540
BpmI CTGGAG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 556
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 6 cut(s) 152, 164, 317, 404, 494, 566
Bse1I ACTGG 2 cut(s) 157, 169
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 268, 445, 549
BseLI CCNNNNNNNGG 6 cut(s) 152, 164, 317, 404, 494, 566
BseNI ACTGG 2 cut(s) 157, 169
BseSI GKGCMC 2 cut(s) 139, 209
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 6 cut(s) 35, 137, 229, 322, 409, 559
BsiSI CCGG 1 cut(s) 555
BslI CCNNNNNNNGG 6 cut(s) 152, 164, 317, 404, 494, 566
BsnI GGCC 6 cut(s) 35, 137, 229, 322, 409, 559
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 3 cut(s) 139, 209, 521
Bsp1720I GCTNAGC 1 cut(s) 500
BspACI CCGC 2 cut(s) 327, 504
BspANI GGCC 6 cut(s) 35, 137, 229, 322, 409, 559
BspLI GGNNCC 3 cut(s) 137, 342, 429
BspQI GCTCTTC 1 cut(s) 79
BsrI ACTGG 2 cut(s) 157, 169
BssECI CCNNGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 569
Bst6I CTCTTC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 500
BstF5I GGATG 3 cut(s) 268, 445, 549
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 131, 554
BstSLI GKGCMC 2 cut(s) 139, 209
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 6 cut(s) 35, 137, 229, 322, 409, 559
BtsCI GGATG 3 cut(s) 268, 445, 549
BtsIMutI CAGTG 1 cut(s) 162
Cfr13I GGNCC 9 cut(s) 135, 136, 155, 320, 340, 407, 427, 557, 569
Csp6I GTAC 5 cut(s) 192, 298, 372, 462, 475
CviAII CATG 2 cut(s) 27, 69
CviQI GTAC 5 cut(s) 192, 298, 372, 462, 475
DdeI CTNAG 1 cut(s) 500
DraIII CACNNNGTG 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 139, 521
Eco47I GGWCC 4 cut(s) 155, 340, 427, 569
EcoO109I RGGNCCY 3 cut(s) 135, 320, 407
EcoRII CCWGG 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 139, 521
FaeI CATG 2 cut(s) 30, 72
FaiI YATR 4 cut(s) 15, 28, 70, 582
FatI CATG 2 cut(s) 26, 68
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 3 cut(s) 255, 432, 556
FriOI GRGCYC 2 cut(s) 139, 521
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 3 cut(s) 324, 404, 411
GluI GCNGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 6 cut(s) 35, 137, 229, 322, 409, 559
HapII CCGG 1 cut(s) 555
Hin1II CATG 2 cut(s) 30, 72
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 1 cut(s) 586
HpaII CCGG 1 cut(s) 555
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 4 cut(s) 300, 387, 477, 572
Hpy188I TCNGA 2 cut(s) 340, 427
Hpy188III TCNNGA 3 cut(s) 174, 246, 541
Hpy8I GTNNAC 4 cut(s) 300, 387, 477, 572
HpyAV CCTTC 2 cut(s) 282, 570
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4V TGCA 1 cut(s) 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 500
Hsp92II CATG 2 cut(s) 30, 72
LguI GCTCTTC 1 cut(s) 79
LpnPI CCDG 9 cut(s) 65, 118, 138, 145, 150, 303, 480, 526, 568
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 534
MaeI CTAG 3 cut(s) 324, 404, 411
MboII GAAGA 4 cut(s) 66, 342, 429, 519
MhlI GDGCHC 3 cut(s) 139, 209, 521
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 9 cut(s) 21, 95, 115, 179, 213, 306, 393, 483, 535
MluNI TGGCCA 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 3 cut(s) 334, 421, 511
MscI TGGCCA 1 cut(s) 229
MseI TTAA 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 2 cut(s) 133, 556
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 134
NciI CCSGG 1 cut(s) 556
NlaIII CATG 2 cut(s) 30, 72
NlaIV GGNNCC 3 cut(s) 137, 342, 429
NsiI ATGCAT 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 79
PdmI GAANNNNTTC 3 cut(s) 334, 421, 511
PfeI GAWTC 1 cut(s) 586
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 3 cut(s) 137, 342, 429
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 9 cut(s) 135, 136, 155, 320, 340, 407, 427, 557, 569
RsaI GTAC 5 cut(s) 193, 299, 373, 463, 476
RsaNI GTAC 5 cut(s) 192, 298, 372, 462, 475
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 129
Sau96I GGNCC 9 cut(s) 135, 136, 155, 320, 340, 407, 427, 557, 569
ScrFI CCNGG 2 cut(s) 133, 556
SduI GDGCHC 3 cut(s) 139, 209, 521
SetI ASST 6 cut(s) 113, 160, 253, 403, 577, 595
SfaNI GCATC 1 cut(s) 534
SinI GGWCC 4 cut(s) 155, 340, 427, 569
Sse9I AATT 9 cut(s) 21, 95, 115, 179, 213, 306, 393, 483, 535
SsiI CCGC 2 cut(s) 327, 504
SspMI CTAG 3 cut(s) 324, 404, 411
StyD4I CCNGG 2 cut(s) 131, 554
TaaI ACNGT 1 cut(s) 569
TaqI TCGA 1 cut(s) 515
TasI AATT 9 cut(s) 21, 95, 115, 179, 213, 306, 393, 483, 535
TatI WGTACW 2 cut(s) 297, 474
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 1 cut(s) 169
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 15, 30
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 152
VpaK11BI GGWCC 4 cut(s) 155, 340, 427, 569
XapI RAATTY 4 cut(s) 21, 95, 115, 179
XmnI GAANNNNTTC 3 cut(s) 334, 421, 511
XspI CTAG 3 cut(s) 324, 404, 411
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.