pycom12g12920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0029012
Physical Location & Seq
Reverse (-)
15396785 .. 15397141
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g12920.1

Sequence Viewer

Length: 357 bp
ATGGGAATGGGACTGTCCTACCAAAACTTGCCATGGTTGGCCTTGCTTCTTTTGCTAGCCTTTGGCGTTGCCTCCTCTTCCTCCTTAGATGGCAAAGAGAAGTATAACCAGTTGCATGGAAGGTGGGCTACAGTTGGCGACATCCTATCGAAGGGCTCTCCAATTCAACCGTCTGGTGCAGCAGCATGTGAAGAACATGGAATTGGAGGGAGTTCACCACCTCTTCCCAAAATACAATCAAGAAGATTCCATTTTGGTATGCTGCCAAAGGGTACTCCAATTCCACCATCTGGTCCTAGTGACAGACCTGATAACAAGACTCCACCTACACCTAGGGCAATTGTTTCAGAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.46

Weight (kDa)

9.3

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029012)

Species Orthologous Gene IDs
prunus_persica Prupe.6G247800_v2.0.a1
pyrus_communis pycom12g12920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 151, 290
AgsI TTSAA 1 cut(s) 167
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 179, 182, 262
AspA2I CCTAGG 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 207
AsuNHI GCTAGC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 293
AvrII CCTAGG 1 cut(s) 332
BanII GRGCYC 1 cut(s) 158
BarI GAAGNNNNNNTAC 2 cut(s) 112, 144
BbvI GCAGC 3 cut(s) 191, 194, 249
BccI CCATC 2 cut(s) 83, 295
BfaI CTAG 3 cut(s) 56, 297, 333
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 3 cut(s) 180, 183, 263
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 3 cut(s) 181, 184, 264
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmtI GCTAGC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 32, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 290
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 32, 332
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 151, 290
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 3 cut(s) 191, 194, 249
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 151, 290
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 158
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 1 cut(s) 41
BspOI GCTAGC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 32, 332
BssT1I CCWWGG 2 cut(s) 32, 332
Bst4CI ACNGT 3 cut(s) 15, 133, 171
Bst6I CTCTTC 2 cut(s) 82, 228
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 85
BstDSI CCRYGG 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 191, 194, 249
BstXI CCANNNNNNTGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 273
CviAII CATG 4 cut(s) 33, 116, 186, 197
CviJI RGCY 4 cut(s) 41, 59, 128, 156
CviKI_1 RGCY 4 cut(s) 41, 59, 128, 156
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 82, 228
EarI CTCTTC 2 cut(s) 82, 228
Eco130I CCWWGG 2 cut(s) 32, 332
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 32, 332
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 2 cut(s) 32, 332
FaeI CATG 4 cut(s) 36, 119, 189, 200
FaiI YATR 6 cut(s) 34, 105, 117, 187, 198, 260
FaqI GGGAC 1 cut(s) 24
FatI CATG 4 cut(s) 32, 115, 185, 196
Fnu4HI GCNGC 3 cut(s) 180, 183, 263
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 180, 183, 263
FspBI CTAG 3 cut(s) 56, 297, 333
GluI GCNGC 3 cut(s) 180, 183, 263
HaeIII GGCC 1 cut(s) 41
Hin1II CATG 4 cut(s) 36, 119, 189, 200
HinfI GANTC 2 cut(s) 246, 319
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 240
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 114, 145
HpyCH4III ACNGT 3 cut(s) 15, 133, 171
HpyCH4V TGCA 2 cut(s) 115, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 4 cut(s) 36, 119, 189, 200
LpnPI CCDG 4 cut(s) 122, 159, 276, 321
Lsp1109I GCAGC 3 cut(s) 191, 194, 249
MaeI CTAG 3 cut(s) 56, 297, 333
MaeIII GTNAC 1 cut(s) 299
MboII GAAGA 4 cut(s) 69, 203, 215, 255
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 5 cut(s) 162, 201, 279, 339, 352
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 5 cut(s) 82, 85, 91, 200, 231
MseI TTAA 1 cut(s) 355
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 52
NcoI CCATGG 1 cut(s) 32
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 4 cut(s) 36, 119, 189, 200
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 189
PfeI GAWTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 290
PkrI GCNGC 3 cut(s) 181, 184, 264
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 293
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 3 cut(s) 180, 183, 263
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 313
SduI GDGCHC 1 cut(s) 158
SetI ASST 5 cut(s) 125, 223, 310, 328, 334
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 293
Sse9I AATT 5 cut(s) 162, 201, 279, 339, 352
SspMI CTAG 3 cut(s) 56, 297, 333
StyI CCWWGG 2 cut(s) 32, 332
TaaI ACNGT 3 cut(s) 15, 133, 171
TaqI TCGA 1 cut(s) 149
TasI AATT 5 cut(s) 162, 201, 279, 339, 352
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 3 cut(s) 179, 182, 262
Tsp45I GTSAC 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 293
XagI CCTNNNNNAGG 1 cut(s) 149
XceI RCATGY 1 cut(s) 189
XmaJI CCTAGG 1 cut(s) 332
XspI CTAG 3 cut(s) 56, 297, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.