Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0028999

Physical Location & Seq

Genomic Coordinates Reverse (-)

25722014 .. 25722711

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G271300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAAGACAGATTAGCGTACTCCAGCACAGAACAGGATATGGTGCTTTTGCATCATGAAGTAGAGGTTGAGTTCCCAGATGGACTTAGAGAGAAGCATTCACGCACTCATTCAGGCACTTTACTGGAATTTGGGCAGACTAAGAATGGTAAAATGATCACCGCCATGGCTTTCACGGTTGGCATCCCGGCAGCCATTGGAGCTCTACTCATACTTGGAAACAAGGTCAAAACAAGAGGGGTCTTGAGGCCTATTGAACCAGAAGTATATGTCCCAGCCATGGATATAATACAAGCTTATGGCATCAAGGTAATGGAGAAGATCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

110

Amino Acids

12.12

Weight (kDa)

5.79

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028999)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G271300_v2.0.a1 Prupe.6G271400_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	2 cut(s)	203, 296
AluI	AGCT	2 cut(s)	203, 296
Alw21I	GWGCWC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	61, 192, 312
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
BpmI	CTGGAG	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	165, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	165, 279
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	203
BseYI	CCCAGC	1 cut(s)	274
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	156, 321
Bsp19I	CCATGG	2 cut(s)	165, 279
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	165, 279
BssMI	GATC	2 cut(s)	156, 321
BssT1I	CCWWGG	2 cut(s)	165, 279
Bst4CI	ACNGT	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	86, 141
BstDSI	CCRYGG	2 cut(s)	165, 279
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	159, 324
BstMBI	GATC	2 cut(s)	156, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	2 cut(s)	165, 279
BtsCI	GGATG	1 cut(s)	183
CciI	TCATGA	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	56, 166, 280
CviJI	RGCY	6 cut(s)	170, 194, 203, 250, 278, 296
CviKI_1	RGCY	6 cut(s)	170, 194, 203, 250, 278, 296
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	86, 141
DpnI	GATC	2 cut(s)	158, 323
DpnII	GATC	2 cut(s)	156, 321
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	165, 279
Eco147I	AGGCCT	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoT14I	CCWWGG	2 cut(s)	165, 279
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	165, 279
FaeI	CATG	3 cut(s)	59, 169, 283
FaiI	YATR	9 cut(s)	41, 57, 167, 212, 268, 270, 281, 287, 300
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	55, 165, 279
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	192
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	3 cut(s)	59, 169, 283
HindIII	AAGCTT	1 cut(s)	294
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	56, 244
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	86, 141
Hsp92II	CATG	3 cut(s)	59, 169, 283
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	156, 321
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	8 cut(s)	20, 37, 90, 99, 110, 201, 273, 288
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	3 cut(s)	61, 192, 312
MalI	GATC	2 cut(s)	158, 323
MboI	GATC	2 cut(s)	156, 321
MboII	GAAGA	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	128
MnlI	CCTC	3 cut(s)	58, 230, 240
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	2 cut(s)	165, 279
NdeII	GATC	2 cut(s)	156, 321
NlaIII	CATG	3 cut(s)	59, 169, 283
PagI	TCATGA	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	274
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	205
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	156, 321
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	5 cut(s)	69, 205, 228, 298, 312
SfaNI	GCATC	3 cut(s)	61, 192, 312
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	1 cut(s)	128
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	205
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	165, 279
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	128
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	72
XapI	RAATTY	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.