Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0028999

Physical Location & Seq

Genomic Coordinates Reverse (-)

25725318 .. 25726021

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G271400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGTGCTTTTGCATCATGAAGTAGAGGTTGAGTTCCCAGATGGACTTAGAGAGAAGCATTCACGCACTCATTCAGGCACTTTACTGGAATTTGGGCAGACTAAGAATGGTAAAATGATCACCGCCATGGCTTTCACGGTTGGCATCCCGGCAGCCATTGGAGCTCTACTCATACTTGGAAACAAGGTCAAAACAAGAGGGGTCTTGAGGCCTATTGAACCAGAAGTATATGTCCCAGCCATGGATATAATACAAGCTTATGGCATCAAGGTAATGGAGAAGATCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

97

Amino Acids

10.6

Weight (kDa)

6.91

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028999)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G271300_v2.0.a1 Prupe.6G271400_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	2 cut(s)	164, 257
AluI	AGCT	2 cut(s)	164, 257
Alw21I	GWGCWC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	3 cut(s)	22, 153, 273
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpuEI	CTTGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	126, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	126, 240
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	235
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	117, 282
Bsp19I	CCATGG	2 cut(s)	126, 240
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	126, 240
BssMI	GATC	2 cut(s)	117, 282
BssT1I	CCWWGG	2 cut(s)	126, 240
Bst4CI	ACNGT	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	47, 102
BstDSI	CCRYGG	2 cut(s)	126, 240
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	120, 285
BstMBI	GATC	2 cut(s)	117, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	2 cut(s)	126, 240
BtsCI	GGATG	1 cut(s)	144
CciI	TCATGA	1 cut(s)	16
CviAII	CATG	3 cut(s)	17, 127, 241
CviJI	RGCY	6 cut(s)	131, 155, 164, 211, 239, 257
CviKI_1	RGCY	6 cut(s)	131, 155, 164, 211, 239, 257
DdeI	CTNAG	2 cut(s)	47, 102
DpnI	GATC	2 cut(s)	119, 284
DpnII	GATC	2 cut(s)	117, 282
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	126, 240
Eco147I	AGGCCT	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	126, 240
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	126, 240
FaeI	CATG	3 cut(s)	20, 130, 244
FaiI	YATR	8 cut(s)	18, 128, 173, 229, 231, 242, 248, 261
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	3 cut(s)	16, 126, 240
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	3 cut(s)	20, 130, 244
HindIII	AAGCTT	1 cut(s)	255
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	17, 205
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	47, 102
Hsp92II	CATG	3 cut(s)	20, 130, 244
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	117, 282
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	6 cut(s)	51, 60, 71, 162, 234, 249
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	3 cut(s)	22, 153, 273
MalI	GATC	2 cut(s)	119, 284
MboI	GATC	2 cut(s)	117, 282
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	89
MnlI	CCTC	3 cut(s)	19, 191, 201
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	149
NcoI	CCATGG	2 cut(s)	126, 240
NdeII	GATC	2 cut(s)	117, 282
NlaIII	CATG	3 cut(s)	20, 130, 244
PagI	TCATGA	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	166
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	117, 282
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	5 cut(s)	30, 166, 189, 259, 273
SfaNI	GCATC	3 cut(s)	22, 153, 273
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	89
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	166
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	126, 240
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	89
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	33
XapI	RAATTY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.