Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0028999

Physical Location & Seq

Genomic Coordinates Reverse (-)

25725318 .. 25726021

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G271400.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGTGCTTTTGCATCATGAAGTAGAGGTTGAGTTCCCAGATGGACTTAGAGAGAAGCATTCACGCACTCATTCAGGCACTTTACTGGAATTTGGGCAGACTAAGAATGGTAAAATGATCACCGCCATGGCTTTCACGGTTGGCATCCCGGCAGCCATTGGAGCTCTACTCATACTTGGAAACAAGGTCAAAACAAGAGGGGTCTTGAGGCCTATTGAACCAGAAGTATATGTCCCAGCCATGGATATAATACAAGCTTATGGCATCAAGGTAATGGAGAAGATCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

97

Amino Acids

10.6

Weight (kDa)

6.91

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028999)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G271300_v2.0.a1 Prupe.6G271400_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	2 cut(s)	164, 257
AluI	AGCT	2 cut(s)	164, 257
Alw21I	GWGCWC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	3 cut(s)	22, 153, 273
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpuEI	CTTGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	126, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	126, 240
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	235
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	117, 282
Bsp19I	CCATGG	2 cut(s)	126, 240
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	126, 240
BssMI	GATC	2 cut(s)	117, 282
BssT1I	CCWWGG	2 cut(s)	126, 240
Bst4CI	ACNGT	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	47, 102
BstDSI	CCRYGG	2 cut(s)	126, 240
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	120, 285
BstMBI	GATC	2 cut(s)	117, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	2 cut(s)	126, 240
BtsCI	GGATG	1 cut(s)	144
CciI	TCATGA	1 cut(s)	16
CviAII	CATG	3 cut(s)	17, 127, 241
CviJI	RGCY	6 cut(s)	131, 155, 164, 211, 239, 257
CviKI_1	RGCY	6 cut(s)	131, 155, 164, 211, 239, 257
DdeI	CTNAG	2 cut(s)	47, 102
DpnI	GATC	2 cut(s)	119, 284
DpnII	GATC	2 cut(s)	117, 282
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	126, 240
Eco147I	AGGCCT	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	126, 240
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	126, 240
FaeI	CATG	3 cut(s)	20, 130, 244
FaiI	YATR	8 cut(s)	18, 128, 173, 229, 231, 242, 248, 261
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	3 cut(s)	16, 126, 240
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	3 cut(s)	20, 130, 244
HindIII	AAGCTT	1 cut(s)	255
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	17, 205
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	47, 102
Hsp92II	CATG	3 cut(s)	20, 130, 244
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	117, 282
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	6 cut(s)	51, 60, 71, 162, 234, 249
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	3 cut(s)	22, 153, 273
MalI	GATC	2 cut(s)	119, 284
MboI	GATC	2 cut(s)	117, 282
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	89
MnlI	CCTC	3 cut(s)	19, 191, 201
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	149
NcoI	CCATGG	2 cut(s)	126, 240
NdeII	GATC	2 cut(s)	117, 282
NlaIII	CATG	3 cut(s)	20, 130, 244
PagI	TCATGA	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	166
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	117, 282
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	5 cut(s)	30, 166, 189, 259, 273
SfaNI	GCATC	3 cut(s)	22, 153, 273
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	89
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	166
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	126, 240
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	89
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	33
XapI	RAATTY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.