Prupe.6G310800_v2.0.a1

Belongs to the importin alpha family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
27847400 .. 27852573
5174 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G310800.1

Sequence Viewer

Length: 1602 bp
ATGTCTCTGCGCCCGGGCACACGTACCGAGGTGCGCAAGAAATCGTACAAGACTGGAGTGGATGCGGACCAGGCTCGGAGGAGAAGGGAGGACAACTTGGTGGAGATCAGGAAGAACAAGCGCGAGGACAATTTGCTCAAGAAGAGAAGGGAAGGCTTGCCTCCGTCCCAGCAGCAACTGCTTGATGGCACCCAAACCGCCGTCGTTTTCGAGAAGAGGTTGGAAAGTATTCCCTCAATGGTGCAAGGAGTATGGTCTGATGATCCTGCTTTGCAATTGGAGGCTACCACTCAGTTTAGGAAGCTATTATCAATTGAACGCAGCCCTCCAATTGACGAGGTTATAAAAGCAGGTGCGGTCCCTCGGTTTGTGGAGTTTCTTGGGAGACATGATATGCCCCAATTGCAATTTGAAGCTGCATGGGCTTTGACCAATGTTGCATCTGGAACATCAGATCATACACGAGTTGTTATTGAACATGGTGCGGTCCCCATGTTTGTGCAGCTTCTTAGCTCTGGCAGTGATGATGTCAGAGAGCAGGCAGTGTGGGCTCTAGGAAATGTTGCTGGTGACTCTCCTAGTTGCAGGGATCTTGTTCTTGGACAAGGTGCACTAATGCCATTGCTAGCTCAATTAAATGAACATTCCAAGTTATCCATGCTAAGGAATGCTACATGGACTTTATCCAACTTTTGTCGTGGCAAGCCAGCAACACCATTTGATCAGGTGAAGCCTGCCTTACCAATTCTTCGACAACTTATTTACTTAAATGATGAAGAAGTCTTGACAGACGCTTGCTGGGCCCTATCATATCTCTCAGATGGTCCAAATGACAAAATTCAGGCTGTGATTGAAGCGGGCGTCTGCCAGCGACTTATGGAGCTTCTGACTCATCCATCACCTACGGTTCTTATACCTGCTCTTCGGACAGTGGGAAACATTGTTACTGGTGATGATTCCCAGACTCAGTTTGTTATTGATAACCAAGTGCTCCCTCACCTCCATCAACTTCTCACACAAAATCACAAAAAGAGCATCAAGAAAGAAGCTTGTTGGACAATTTCAAATATCACAGCCGGGAATAAAATTCAAATACAGGCTGTGATTGAAGCCGATATAATCCTCCCGCTTGTGCAAGTTCTCCAACATGCAGAATTTGACATAAAAAAGGAGGCTGCGTGGGCCATCTCAAATGCCACTTCTGGAGGATCTCATGAACAGATTCAACACCTGGCTTCCAGAGGTTGTATTAAACCGCTCTGTGATCTTCTAATCTGCCCAGATCCAAGGATTATAACTGTGTGCCTTGAAGGTCTTGAGAACATTCTGAAGGTGGGTGAGGCAGACAAAGAAATGGGAATGAATGACGGGATCAATCTTTATGCACAACTGGTCGATGAATGTGAAGGTTTGGATAAGATTGAGAATCTGCAGACACATGATAACAATGAAATTTATGAGAAGGCTGTGAAGATCTTGGAGAGATATTGGGCCGAGGAAGAAGAAGGACAGAACATTCAGGAGAATGGGGATGGAAATCAGCATGATTTTACTTTTGGAGCAAACCAGCCCAACCCTCCCCCTGGTGGTTTCAAATTTTGA

Protein Analysis

534

Amino Acids

59.29

Weight (kDa)

5.32

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 344, 1295
AarI CACCTGC 1 cut(s) 341
Acc16I TGCGCA 1 cut(s) 35
Acc36I ACCTGC 2 cut(s) 341, 925
AccB1I GGYRCC 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 1258
AccII CGCG 1 cut(s) 123
AciI CCGC 7 cut(s) 65, 198, 356, 485, 857, 1127, 1256
AclWI GGATC 5 cut(s) 257, 597, 1216, 1277, 1379
AcsI RAATTY 5 cut(s) 837, 1086, 1154, 1452, 1595
AcuI CTGAAG 1 cut(s) 1349
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 2 cut(s) 25, 47
AfiI CCNNNNNNNGG 3 cut(s) 663, 1583, 1586
AflIII ACRYGT 1 cut(s) 20
AjnI CCWGG 3 cut(s) 69, 1230, 1582
AluBI AGCT 7 cut(s) 304, 416, 505, 513, 629, 883, 1049
AluI AGCT 7 cut(s) 304, 416, 505, 513, 629, 883, 1049
Alw21I GWGCWC 2 cut(s) 613, 993
Alw26I GTCTC 2 cut(s) 9, 379
Alw44I GTGCAC 1 cut(s) 609
AlwI GGATC 5 cut(s) 257, 597, 1216, 1277, 1379
AlwNI CAGNNNCTG 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 3 cut(s) 801, 1182, 1491
ApaI GGGCCC 1 cut(s) 805
ApaLI GTGCAC 1 cut(s) 609
ApeKI GCWGC 5 cut(s) 172, 321, 416, 502, 1175
ApoI RAATTY 5 cut(s) 837, 1086, 1154, 1452, 1595
Asp700I GAANNNNTTC 2 cut(s) 228, 1221
AspLEI GCGC 3 cut(s) 12, 36, 123
AspS9I GGNCC 8 cut(s) 67, 358, 487, 801, 802, 824, 1182, 1491
AsuC2I CCSGG 3 cut(s) 14, 15, 1078
AsuHPI GGTGA 6 cut(s) 581, 739, 891, 962, 989, 1349
AsuNHI GCTAGC 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 4 cut(s) 67, 358, 487, 824
BaeGI GKGCMC 3 cut(s) 20, 613, 805
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 2 cut(s) 553, 805
BauI CACGAG 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 613, 993
BbvI GCAGC 5 cut(s) 184, 333, 403, 514, 1162
BccI CCATC 6 cut(s) 179, 815, 904, 1011, 1193, 1526
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 3 cut(s) 71, 1232, 1584
BclI TGATCA 1 cut(s) 721
BcnI CCSGG 3 cut(s) 14, 15, 1078
BcoDI GTCTC 2 cut(s) 9, 379
BfaI CTAG 3 cut(s) 554, 579, 626
BfmI CTRYAG 1 cut(s) 1430
BfuAI ACCTGC 2 cut(s) 341, 925
BglII AGATCT 1 cut(s) 1473
BisI GCNGC 5 cut(s) 173, 322, 417, 503, 1176
BlsI GCNGC 5 cut(s) 174, 323, 418, 504, 1177
Bme1390I CCNGG 6 cut(s) 14, 15, 71, 1078, 1232, 1584
Bme18I GGWCC 4 cut(s) 67, 358, 487, 824
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 8 cut(s) 67, 358, 487, 801, 802, 824, 1182, 1491
BmiI GGNNCC 4 cut(s) 190, 360, 489, 803
BmrFI CCNGG 6 cut(s) 14, 15, 71, 1078, 1232, 1584
BmsI GCATC 3 cut(s) 52, 449, 1044
BmtI GCTAGC 1 cut(s) 629
BpmI CTGGAG 2 cut(s) 75, 1224
Bpu10I CCTNAGC 1 cut(s) 662
BpuEI CTTGAG 2 cut(s) 122, 1337
BpuMI CCSGG 3 cut(s) 14, 15, 1078
BsaAI YACGTR 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 1536
BsaHI GRCGYC 1 cut(s) 861
BsaJI CCNNGG 6 cut(s) 13, 27, 362, 1286, 1494, 1582
BsaXI ACNNNNNCTCC 2 cut(s) 1163, 1193
Bsc4I CCNNNNNNNGG 3 cut(s) 663, 1583, 1586
Bse1I ACTGG 3 cut(s) 58, 952, 1395
Bse3DI GCAATG 1 cut(s) 620
Bse8I GATNNNNATC 1 cut(s) 1536
BseBI CCWGG 3 cut(s) 71, 1232, 1584
BseDI CCNNGG 6 cut(s) 13, 27, 362, 1286, 1494, 1582
BseGI GGATG 3 cut(s) 67, 892, 1537
BseJI GATNNNNATC 1 cut(s) 1536
BseLI CCNNNNNNNGG 3 cut(s) 663, 1583, 1586
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 3 cut(s) 305, 831, 980
BseNI ACTGG 3 cut(s) 58, 952, 1395
BseRI GAGGAG 1 cut(s) 94
BseSI GKGCMC 3 cut(s) 20, 613, 805
BseXI GCAGC 5 cut(s) 184, 333, 403, 514, 1162
BseYI CCCAGC 2 cut(s) 168, 798
BsgI GTGCAG 1 cut(s) 521
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 803, 1184, 1493
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 2 cut(s) 613, 993
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 2 cut(s) 14, 1077
BslFI GGGAC 3 cut(s) 151, 344, 473
BslI CCNNNNNNNGG 3 cut(s) 663, 1583, 1586
BsmAI GTCTC 2 cut(s) 9, 379
BsmFI GGGAC 3 cut(s) 151, 344, 473
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 3 cut(s) 803, 1184, 1493
BsoBI CYCGRG 1 cut(s) 13
Bsp120I GGGCCC 1 cut(s) 801
Bsp1286I GDGCHC 5 cut(s) 20, 553, 613, 805, 993
BspACI CCGC 7 cut(s) 65, 198, 356, 485, 857, 1127, 1256
BspANI GGCC 3 cut(s) 803, 1184, 1493
BspCNI CTCAG 3 cut(s) 304, 830, 979
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 1213
BspLI GGNNCC 4 cut(s) 190, 360, 489, 803
BspMAI CTGCAG 1 cut(s) 1434
BspMI ACCTGC 2 cut(s) 341, 925
BspOI GCTAGC 1 cut(s) 629
BspPI GGATC 5 cut(s) 257, 597, 1216, 1277, 1379
BspQI GCTCTTC 1 cut(s) 927
BspT107I GGYRCC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 1258
BsrDI GCAATG 1 cut(s) 620
BsrI ACTGG 3 cut(s) 58, 952, 1395
BssECI CCNNGG 6 cut(s) 13, 27, 362, 1286, 1494, 1582
BssNI GRCGYC 1 cut(s) 861
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 1286
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 3 cut(s) 71, 1232, 1584
Bst4CI ACNGT 3 cut(s) 907, 931, 1300
Bst6I CTCTTC 3 cut(s) 137, 209, 927
BstACI GRCGYC 1 cut(s) 861
BstAPI GCANNNNNTGC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 23
BstC8I GCNNGC 9 cut(s) 158, 540, 627, 704, 708, 735, 796, 859, 869
BstDEI CTNAG 5 cut(s) 291, 509, 662, 817, 966
BstF5I GGATG 3 cut(s) 67, 892, 1537
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 3 cut(s) 12, 36, 123
BstMAI GTCTC 2 cut(s) 9, 379
BstMWI GCNNNNNNNGC 7 cut(s) 71, 178, 403, 422, 548, 800, 1181
BstNI CCWGG 3 cut(s) 71, 1232, 1584
BstNSI RCATGY 1 cut(s) 1151
BstSCI CCNGG 6 cut(s) 12, 13, 69, 1076, 1230, 1582
BstSFI CTRYAG 1 cut(s) 1430
BstSLI GKGCMC 3 cut(s) 20, 613, 805
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 5 cut(s) 184, 333, 403, 514, 1162
BstX2I RGATCY 4 cut(s) 589, 1208, 1282, 1473
BstYI RGATCY 4 cut(s) 589, 1208, 1282, 1473
BsuRI GGCC 3 cut(s) 803, 1184, 1493
BtsCI GGATG 3 cut(s) 67, 892, 1537
BtsI GCAGTG 2 cut(s) 526, 549
BtsIMutI CAGTG 3 cut(s) 526, 549, 936
BveI ACCTGC 2 cut(s) 341, 925
Cac8I GCNNGC 9 cut(s) 158, 540, 627, 704, 708, 735, 796, 859, 869
CaiI CAGNNNCTG 1 cut(s) 178
CciI TCATGA 1 cut(s) 1213
CfoI GCGC 3 cut(s) 12, 36, 123
Cfr13I GGNCC 8 cut(s) 67, 358, 487, 801, 802, 824, 1182, 1491
Cfr9I CCCGGG 1 cut(s) 13
CseI GACGC 2 cut(s) 800, 850
Csp6I GTAC 2 cut(s) 24, 46
CviQI GTAC 2 cut(s) 24, 46
DdeI CTNAG 5 cut(s) 291, 509, 662, 817, 966
Eam1104I CTCTTC 3 cut(s) 137, 209, 927
EarI CTCTTC 3 cut(s) 137, 209, 927
Eco130I CCWWGG 1 cut(s) 1286
Eco24I GRGCYC 2 cut(s) 553, 805
Eco47I GGWCC 4 cut(s) 67, 358, 487, 824
Eco57I CTGAAG 1 cut(s) 1349
Eco88I CYCGRG 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 802
EcoRII CCWGG 3 cut(s) 69, 1230, 1582
EcoT14I CCWWGG 1 cut(s) 1286
EcoT38I GRGCYC 2 cut(s) 553, 805
ErhI CCWWGG 1 cut(s) 1286
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 3 cut(s) 151, 344, 473
FauI CCCGC 2 cut(s) 850, 1134
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 5 cut(s) 173, 322, 417, 503, 1176
FokI GGATG 3 cut(s) 74, 879, 1544
FriOI GRGCYC 2 cut(s) 553, 805
Fsp4HI GCNGC 5 cut(s) 173, 322, 417, 503, 1176
FspBI CTAG 3 cut(s) 554, 579, 626
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 3 cut(s) 11, 35, 122
GluI GCNGC 5 cut(s) 173, 322, 417, 503, 1176
GsaI CCCAGC 2 cut(s) 172, 802
GsuI CTGGAG 2 cut(s) 75, 1224
HaeIII GGCC 3 cut(s) 803, 1184, 1493
HapII CCGG 2 cut(s) 14, 1077
HgaI GACGC 2 cut(s) 800, 850
HhaI GCGC 3 cut(s) 12, 36, 123
Hin1I GRCGYC 1 cut(s) 861
Hin6I GCGC 3 cut(s) 10, 34, 121
HinP1I GCGC 3 cut(s) 10, 34, 121
HindIII AAGCTT 1 cut(s) 1047
HinfI GANTC 6 cut(s) 572, 889, 956, 964, 1222, 1426
HpaII CCGG 2 cut(s) 14, 1077
HphI GGTGA 6 cut(s) 581, 739, 891, 962, 989, 1349
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 8 cut(s) 78, 259, 454, 533, 820, 888, 927, 1329
Hpy8I GTNNAC 1 cut(s) 611
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 8 cut(s) 78, 141, 146, 1304, 1324, 1400, 1456, 1499
HpyCH4III ACNGT 3 cut(s) 907, 931, 1300
HpyCH4IV ACGT 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 178, 403, 422, 548, 800, 1181
HpyF3I CTNAG 5 cut(s) 291, 509, 662, 817, 966
HpySE526I ACGT 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 861
HspAI GCGC 3 cut(s) 10, 34, 121
Ksp22I TGATCA 1 cut(s) 721
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 3 cut(s) 880, 996, 1559
Lsp1109I GCAGC 5 cut(s) 184, 333, 403, 514, 1162
LweI GCATC 3 cut(s) 52, 449, 1044
MaeI CTAG 3 cut(s) 554, 579, 626
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 2 cut(s) 569, 943
MbiI CCGCTC 1 cut(s) 1258
MfeI CAATTG 4 cut(s) 275, 312, 330, 401
MflI RGATCY 4 cut(s) 589, 1208, 1282, 1473
MhlI GDGCHC 5 cut(s) 20, 553, 613, 805, 993
MlyI GAGTC 3 cut(s) 566, 883, 958
MmeI TCCRAC 4 cut(s) 201, 711, 1034, 1168
MroXI GAANNNNTTC 2 cut(s) 228, 1221
MseI TTAA 3 cut(s) 635, 767, 1251
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 2 cut(s) 14, 1077
MspR9I CCNGG 6 cut(s) 14, 15, 71, 1078, 1232, 1584
MunI CAATTG 4 cut(s) 275, 312, 330, 401
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 3 cut(s) 71, 1232, 1584
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 7 cut(s) 71, 178, 403, 422, 548, 800, 1181
NciI CCSGG 3 cut(s) 14, 15, 1078
NheI GCTAGC 1 cut(s) 625
NlaIV GGNNCC 4 cut(s) 190, 360, 489, 803
NmeAIII GCCGAG 1 cut(s) 1519
NmuCI GTSAC 1 cut(s) 569
NsbI TGCGCA 1 cut(s) 35
NspI RCATGY 1 cut(s) 1151
PagI TCATGA 1 cut(s) 1213
PaqCI CACCTGC 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 927
PctI GAATGC 1 cut(s) 673
PdmI GAANNNNTTC 2 cut(s) 228, 1221
PfeI GAWTC 3 cut(s) 956, 1222, 1426
PkrI GCNGC 5 cut(s) 174, 323, 418, 504, 1177
PleI GAGTC 3 cut(s) 566, 883, 958
PpsI GAGTC 3 cut(s) 566, 883, 958
Ppu21I YACGTR 1 cut(s) 23
PsiI TTATAA 2 cut(s) 344, 1295
Psp6I CCWGG 3 cut(s) 69, 1230, 1582
PspFI CCCAGC 2 cut(s) 168, 798
PspGI CCWGG 3 cut(s) 69, 1230, 1582
PspN4I GGNNCC 4 cut(s) 190, 360, 489, 803
PspOMI GGGCCC 1 cut(s) 801
PspPI GGNCC 8 cut(s) 67, 358, 487, 801, 802, 824, 1182, 1491
PstI CTGCAG 1 cut(s) 1434
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 4 cut(s) 589, 1208, 1282, 1473
RsaI GTAC 2 cut(s) 25, 47
RsaNI GTAC 2 cut(s) 24, 46
RseI CAYNNNNRTG 1 cut(s) 497
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 3 cut(s) 635, 767, 1251
SatI GCNGC 5 cut(s) 173, 322, 417, 503, 1176
Sau96I GGNCC 8 cut(s) 67, 358, 487, 801, 802, 824, 1182, 1491
SchI GAGTC 3 cut(s) 566, 883, 958
ScrFI CCNGG 6 cut(s) 14, 15, 71, 1078, 1232, 1584
SduI GDGCHC 5 cut(s) 20, 553, 613, 805, 993
SfaNI GCATC 3 cut(s) 52, 449, 1044
SfcI CTRYAG 1 cut(s) 1430
SinI GGWCC 4 cut(s) 67, 358, 487, 824
SmaI CCCGGG 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 137, 1316
SmoI CTYRAG 2 cut(s) 137, 1316
SrfI GCCCGGGC 1 cut(s) 15
SsiI CCGC 7 cut(s) 65, 198, 356, 485, 857, 1127, 1256
SspMI CTAG 3 cut(s) 554, 579, 626
StyD4I CCNGG 6 cut(s) 12, 13, 69, 1076, 1230, 1582
StyI CCWWGG 1 cut(s) 1286
TaaI ACNGT 3 cut(s) 907, 931, 1300
TaiI ACGT 1 cut(s) 25
TaqI TCGA 3 cut(s) 210, 751, 1395
TfiI GAWTC 3 cut(s) 956, 1222, 1426
Tru1I TTAA 3 cut(s) 635, 767, 1251
Tru9I TTAA 3 cut(s) 635, 767, 1251
TscAI CASTG 3 cut(s) 526, 549, 936
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 5 cut(s) 172, 321, 416, 502, 1175
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 6 cut(s) 654, 789, 1230, 1376, 1413, 1464
TspGWI ACGGA 1 cut(s) 153
TspMI CCCGGG 1 cut(s) 13
TspRI CASTG 3 cut(s) 526, 549, 936
VneI GTGCAC 1 cut(s) 609
VpaK11BI GGWCC 4 cut(s) 67, 358, 487, 824
XapI RAATTY 5 cut(s) 837, 1086, 1154, 1452, 1595
XceI RCATGY 1 cut(s) 1151
XmaI CCCGGG 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 228, 1221
XspI CTAG 3 cut(s) 554, 579, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.