Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0024571

Physical Location & Seq

Genomic Coordinates Forward (+)

2237041 .. 2238711

Gene Structure 1671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G015500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

GGAGGGGAAAAGCAGAGTTCTAGTGCCTCAAGCTTAAGTGATGAAGGTTCACTACCATTTGTTCAATCAGAACAACAACATACAGCACCTCTCACTGCACCTATTGTGTCTTCCTACAATCACAAAATCCGTCCTCTGCTTGATGCGGTTGACAAGCTCCATAACCTAAATGTGACGGAGGAAAACATCCAACTTCCCACCGTTGTAGTTGTAGGGGACCAATCCTCTGGTAAGTCCAGCGTCCTTGAGTCCTTGGCTGGCATCAGCCTTCCCCGCGGTCAAGGTATCTGCACAAGGGTACCTCTGATAATGAGGCTAAAACAGAGTTCCAGTCCTCAATCAGAGCTTTCCTTAAGTTACAATGGCAGAGAGGACCACACAGATGAGGAACACATTTCAGAGGATATTATTAAAGCCACTAATTCTATAGCTGGCAGTGGCAAAGGAATTTCTAATACCCCATTGACTCTGACTCTGAAAAATAATGGCGTCCCAGATTTGACAATGGTTTATCTTCCCGGGATCACTAGAGTGCCTGTTCATGGCCAGCCGGAAAATATTTATGATCAAATTAAAGACATGATCACGGAGTATATAAAGCCAGAAGAGAGCATCATTTTGAATATGTTGTCTACTAGTGTTGCTTTTACTACTTTTGAATCAATTAGGATGTCACAGAGTGTGGATAAGAATGGTGAGGGGACTCTTGCTGTTATTACGAAAATGGATAAGTTACCTGAAGGGTTGCTTGAGAAGGTCATAGGAGATGATGTGCACATCGGACTTGGTTATGTGTGTGTGAGGAACCGGATTGATGACAAAGACAGACACATGCACTGCACAGCTCGGTTGGTTGAGATGCTGAATCAGCTCTCAAATGAACTTGAGATTCTTGTTAGACCTCCTTGCCATTACCAAGTTCGCATATGGTTTTTGATTGAAGAGCGTCCTTGTTTAAGTGGTAATGAAAAGCATCTTACAAATGACCTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

332

Amino Acids

36.5

Weight (kDa)

5.26

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024571)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G015500_v2.0.a1
rosa_samantha	Rh2BG332800 Rh2DG351000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	632
AccII	CGCG	1 cut(s)	276
AciI	CCGC	3 cut(s)	146, 274, 276
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	759
AcyI	GRCGYC	1 cut(s)	489
AdeI	CACNNNGTG	1 cut(s)	680
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	542
AflII	CTTAAG	2 cut(s)	34, 352
AgsI	TTSAA	5 cut(s)	65, 622, 659, 941, 992
AhlI	ACTAGT	1 cut(s)	635
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	6 cut(s)	33, 157, 346, 431, 845, 871
AluI	AGCT	6 cut(s)	33, 157, 346, 431, 845, 871
Alw21I	GWGCWC	1 cut(s)	777
Alw44I	GTGCAC	1 cut(s)	773
AlwI	GGATC	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	1 cut(s)	544
ApaLI	GTGCAC	1 cut(s)	773
ApoI	RAATTY	1 cut(s)	447
Asp718I	GGTACC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	217, 373
AsuC2I	CCSGG	2 cut(s)	519, 520
AsuHPI	GGTGA	1 cut(s)	707
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	217, 373
BaeGI	GKGCMC	1 cut(s)	777
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BalI	TGGCCA	1 cut(s)	546
BanI	GGYRCC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	36, 68
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	777
BclI	TGATCA	2 cut(s)	565, 582
BcnI	CCSGG	2 cut(s)	519, 520
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	3 cut(s)	21, 528, 636
BfmI	CTRYAG	1 cut(s)	426
BfrI	CTTAAG	2 cut(s)	34, 352
Bme1390I	CCNGG	2 cut(s)	519, 520
Bme18I	GGWCC	2 cut(s)	217, 373
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	217, 373
BmiI	GGNNCC	3 cut(s)	218, 300, 806
BmrFI	CCNGG	2 cut(s)	519, 520
BmsI	GCATC	5 cut(s)	133, 270, 621, 849, 982
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	4 cut(s)	13, 266, 770, 905
BpuMI	CCSGG	2 cut(s)	519, 520
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	3 cut(s)	252, 274, 518
BsaWI	WCCGGW	1 cut(s)	807
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	252, 274, 518
BseGI	GGATG	2 cut(s)	186, 675
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	777
BsgI	GTGCAG	3 cut(s)	81, 274, 823
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	777
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	3 cut(s)	519, 551, 808
BslFI	GGGAC	3 cut(s)	230, 476, 715
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmFI	GGGAC	3 cut(s)	230, 476, 715
BsnI	GGCC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp143I	GATC	3 cut(s)	522, 565, 582
BspACI	CCGC	3 cut(s)	146, 274, 276
BspANI	GGCC	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	3 cut(s)	218, 300, 806
BspPI	GGATC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	936
BspT107I	GGYRCC	1 cut(s)	298
BspTI	CTTAAG	2 cut(s)	34, 352
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	252, 274, 518
BssMI	GATC	3 cut(s)	522, 565, 582
BssNI	GRCGYC	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	600, 936
BstACI	GRCGYC	1 cut(s)	489
BstAFI	CTTAAG	2 cut(s)	34, 352
BstC8I	GCNNGC	3 cut(s)	259, 433, 548
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	186, 675
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	3 cut(s)	525, 568, 585
BstMBI	GATC	3 cut(s)	522, 565, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 868
BstNSI	RCATGY	1 cut(s)	835
BstSCI	CCNGG	2 cut(s)	517, 518
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	777
BstUI	CGCG	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	186, 675
BtsI	GCAGTG	3 cut(s)	93, 442, 835
BtsIMutI	CAGTG	3 cut(s)	93, 442, 835
Cac8I	GCNNGC	3 cut(s)	259, 433, 548
Cfr13I	GGNCC	2 cut(s)	217, 373
Cfr42I	CCGCGG	1 cut(s)	277
Cfr9I	CCCGGG	1 cut(s)	518
CseI	GACGC	3 cut(s)	229, 478, 935
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	3 cut(s)	542, 580, 832
CviQI	GTAC	1 cut(s)	299
DpnI	GATC	3 cut(s)	524, 567, 584
DpnII	GATC	3 cut(s)	522, 565, 582
DraIII	CACNNNGTG	1 cut(s)	680
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	2 cut(s)	600, 936
EarI	CTCTTC	2 cut(s)	600, 936
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	217, 373
Eco57I	CTGAAG	1 cut(s)	759
Eco88I	CYCGRG	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	3 cut(s)	545, 583, 835
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	3 cut(s)	230, 476, 715
FatI	CATG	3 cut(s)	541, 579, 831
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	926
FbaI	TGATCA	2 cut(s)	565, 582
FblI	GTMKAC	1 cut(s)	632
FokI	GGATG	2 cut(s)	173, 682
FspBI	CTAG	3 cut(s)	21, 528, 636
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	3 cut(s)	519, 551, 808
HgaI	GACGC	3 cut(s)	229, 478, 935
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	3 cut(s)	545, 583, 835
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	7 cut(s)	248, 466, 472, 659, 703, 865, 889
HpaII	CCGG	3 cut(s)	519, 551, 808
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	4 cut(s)	50, 151, 633, 775
Hpy188I	TCNGA	7 cut(s)	70, 306, 343, 400, 471, 477, 782
Hpy8I	GTNNAC	4 cut(s)	50, 151, 633, 775
HpyAV	CCTTC	4 cut(s)	38, 278, 734, 748
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	5 cut(s)	98, 291, 775, 835, 840
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 868
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	3 cut(s)	545, 583, 835
KpnI	GGTACC	1 cut(s)	302
Ksp22I	TGATCA	2 cut(s)	565, 582
KspI	CCGCGG	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	522, 565, 582
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	1 cut(s)	162
LweI	GCATC	5 cut(s)	133, 270, 621, 849, 982
MaeI	CTAG	3 cut(s)	21, 528, 636
MaeIII	GTNAC	4 cut(s)	172, 356, 672, 732
MalI	GATC	3 cut(s)	524, 567, 584
MboI	GATC	3 cut(s)	522, 565, 582
MboII	GAAGA	4 cut(s)	102, 506, 617, 953
MhlI	GDGCHC	1 cut(s)	777
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	4 cut(s)	421, 447, 570, 663
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	4 cut(s)	257, 460, 466, 697
MmeI	TCCRAC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	5 cut(s)	35, 353, 411, 573, 956
MslI	CAYNNNNRTG	2 cut(s)	381, 530
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	276
MspCI	CTTAAG	2 cut(s)	34, 352
MspI	CCGG	3 cut(s)	519, 551, 808
MspR9I	CCNGG	2 cut(s)	519, 520
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	273, 868
NciI	CCSGG	2 cut(s)	519, 520
NdeI	CATATG	1 cut(s)	926
NdeII	GATC	3 cut(s)	522, 565, 582
NlaIII	CATG	3 cut(s)	545, 583, 835
NlaIV	GGNNCC	3 cut(s)	218, 300, 806
NmuCI	GTSAC	2 cut(s)	172, 672
NspI	RCATGY	1 cut(s)	835
OliI	CACNNNNGTG	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	936
PfeI	GAWTC	3 cut(s)	659, 865, 889
PleI	GAGTC	4 cut(s)	256, 460, 466, 697
PpsI	GAGTC	4 cut(s)	256, 460, 466, 697
PspN4I	GGNNCC	3 cut(s)	218, 300, 806
PspPI	GGNCC	2 cut(s)	217, 373
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	2 cut(s)	381, 530
SacII	CCGCGG	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	5 cut(s)	35, 353, 411, 573, 956
Sau3AI	GATC	3 cut(s)	522, 565, 582
Sau96I	GGNCC	2 cut(s)	217, 373
SchI	GAGTC	4 cut(s)	257, 460, 466, 697
ScrFI	CCNGG	2 cut(s)	519, 520
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	5 cut(s)	133, 270, 621, 849, 982
SfcI	CTRYAG	1 cut(s)	426
Sfr303I	CCGCGG	1 cut(s)	277
SgrBI	CCGCGG	1 cut(s)	277
SinI	GGWCC	2 cut(s)	217, 373
SmaI	CCCGGG	1 cut(s)	520
SmiMI	CAYNNNNRTG	2 cut(s)	381, 530
SmlI	CTYRAG	6 cut(s)	28, 34, 245, 352, 749, 884
SmoI	CTYRAG	6 cut(s)	28, 34, 245, 352, 749, 884
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	4 cut(s)	421, 447, 570, 663
SsiI	CCGC	3 cut(s)	146, 274, 276
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	3 cut(s)	21, 528, 636
StyD4I	CCNGG	2 cut(s)	517, 518
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	202
TasI	AATT	4 cut(s)	421, 447, 570, 663
TfiI	GAWTC	3 cut(s)	659, 865, 889
Tru1I	TTAA	5 cut(s)	35, 353, 411, 573, 956
Tru9I	TTAA	5 cut(s)	35, 353, 411, 573, 956
TscAI	CASTG	3 cut(s)	100, 442, 842
TseFI	GTSAC	2 cut(s)	172, 672
Tsp45I	GTSAC	2 cut(s)	172, 672
TspDTI	ATGAA	4 cut(s)	57, 530, 894, 981
TspGWI	ACGGA	3 cut(s)	119, 191, 602
TspMI	CCCGGG	1 cut(s)	518
TspRI	CASTG	3 cut(s)	100, 442, 842
Vha464I	CTTAAG	2 cut(s)	34, 352
VneI	GTGCAC	1 cut(s)	773
VpaK11BI	GGWCC	2 cut(s)	217, 373
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	835
XmaI	CCCGGG	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	632
XspI	CTAG	3 cut(s)	21, 528, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.