Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0029086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7469576 .. 7471338

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATCAATGAAGGCAACGAATTTGCAGAGTCATTTCTTCATTGTGTTTCTCCTCATCAACGAGTCGATCAGTTTGAGTTCACACCGTCTTCCCCTATGAGCGGCGGCCGCGACCTCACGGTGGTTAAGAAGCTTAACCACAATGCCAGTGAGCGCGATGACCGCAAAAAGATTAACACTTTATATTCCACTCTTCGTTCCTTGCTTCCAGCATCATATCAAATGAAAAAACTAAGCAATCCAGCCGCAATTTCACGGGCCGTGAAATACATACCGGAGCTGCAACAACAAGTGAAAGGACTGATTCAGAAAAAGGAAGAACTGTTATCAAGACTTCGTAGGTTGCAGCAGCAGGGAGATCCAATTTACAATGAGAAGCAAAGCAGAAGTGCAGCTTTGAGCTCTTTATCTGCTTCTGCATTTGCAGTGAGTTGGCTCAATGACAGAGAAGTTGTGCTTCAGATTTCTTCATATGTGGTCCAGAAGAGTCCATTATCACAAATCTTGGTTGATTTGGAAGAGGATGGGCTTCTGCTACTTAATGCTTCCTCCTTTGAGTCCTTTGAAGGAAGGCTCTTCTGTAGTCTTCATATTCAGGTAGAAAGAACTTGTAGAATGGAGTGCAACATTCTGAATGAGAAGAATATCATTCCATTAATGTGTGACAGGAGAAAAGGGTGTTTTCCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

231

Amino Acids

26.15

Weight (kDa)

8.66

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029086)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G040300_v2.0.a1 Prupe.7G040500_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	102
AccII	CGCG	2 cut(s)	111, 156
AciI	CCGC	5 cut(s)	102, 105, 109, 163, 246
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	101, 121
AgsI	TTSAA	1 cut(s)	566
AluBI	AGCT	4 cut(s)	133, 280, 395, 402
AluI	AGCT	4 cut(s)	133, 280, 395, 402
Alw21I	GWGCWC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	2 cut(s)	106, 258
ApeKI	GCWGC	4 cut(s)	280, 346, 349, 392
ApoI	RAATTY	1 cut(s)	20
AseI	ATTAAT	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	258, 478
AvaII	GGWCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	81, 578
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	4 cut(s)	267, 358, 361, 404
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	580
BisI	GCNGC	8 cut(s)	103, 106, 109, 246, 281, 347, 350, 393
BlsI	GCNGC	8 cut(s)	104, 107, 110, 247, 282, 348, 351, 394
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	258, 478
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	81, 578
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 121
Bse1I	ACTGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	2 cut(s)	101, 121
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	42
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	4 cut(s)	267, 358, 361, 404
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	2 cut(s)	111, 156
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	108, 260
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	101, 121
BsnI	GGCC	2 cut(s)	108, 260
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	3 cut(s)	3, 67, 358
BspACI	CCGC	5 cut(s)	102, 105, 109, 163, 246
BspANI	GGCC	2 cut(s)	108, 260
BspFNI	CGCG	2 cut(s)	111, 156
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	3, 67, 358
Bst4CI	ACNGT	3 cut(s)	87, 121, 324
Bst6I	CTCTTC	4 cut(s)	198, 479, 513, 581
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	2 cut(s)	111, 156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	6, 70, 361
BstMBI	GATC	3 cut(s)	3, 67, 358
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 162
BstSFI	CTRYAG	1 cut(s)	580
BstUI	CGCG	2 cut(s)	111, 156
BstV1I	GCAGC	4 cut(s)	267, 358, 361, 404
BstV2I	GAAGAC	2 cut(s)	81, 578
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	108, 260
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	154, 432
CciNI	GCGGCCGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	258, 478
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	3 cut(s)	5, 69, 360
DpnII	GATC	3 cut(s)	3, 67, 358
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	4 cut(s)	198, 479, 513, 581
EarI	CTCTTC	4 cut(s)	198, 479, 513, 581
Ecl136II	GAGCTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	478
Eco52I	CGGCCG	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	404
FaiI	YATR	7 cut(s)	98, 184, 217, 272, 472, 474, 591
FalI	AAGNNNNNCTT	4 cut(s)	379, 411, 441, 473
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	8 cut(s)	103, 106, 109, 246, 281, 347, 350, 393
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	8 cut(s)	103, 106, 109, 246, 281, 347, 350, 393
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	8 cut(s)	103, 106, 109, 246, 281, 347, 350, 393
HaeIII	GGCC	2 cut(s)	108, 260
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	5 cut(s)	29, 63, 304, 487, 557
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	309, 462, 633
Hpy188III	TCNNGA	2 cut(s)	330, 481
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	3 cut(s)	5, 560, 564
HpyCH4III	ACNGT	3 cut(s)	87, 121, 324
HpyCH4V	TGCA	7 cut(s)	26, 283, 346, 392, 419, 425, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 162
HpyF3I	CTNAG	1 cut(s)	233
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 67, 358
LguI	GCTCTTC	1 cut(s)	581
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	8 cut(s)	160, 222, 255, 288, 338, 494, 581, 652
Lsp1109I	GCAGC	4 cut(s)	267, 358, 361, 404
LweI	GCATC	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	3 cut(s)	5, 69, 360
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	3 cut(s)	3, 67, 358
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	3 cut(s)	20, 249, 363
MlyI	GAGTC	4 cut(s)	38, 72, 496, 566
MnlI	CCTC	4 cut(s)	63, 125, 514, 559
MseI	TTAA	5 cut(s)	126, 135, 174, 540, 656
MslI	CAYNNNNRTG	1 cut(s)	658
MspI	CCGG	1 cut(s)	275
MvnI	CGCG	2 cut(s)	111, 156
MwoI	GCNNNNNNNGC	2 cut(s)	108, 162
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	3 cut(s)	3, 67, 358
NmuCI	GTSAC	1 cut(s)	662
NotI	GCGGCCGC	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	581
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	8 cut(s)	104, 107, 110, 247, 282, 348, 351, 394
PleI	GAGTC	4 cut(s)	37, 71, 495, 565
PpsI	GAGTC	4 cut(s)	37, 71, 495, 565
PshBI	ATTAAT	1 cut(s)	656
Psp124BI	GAGCTC	1 cut(s)	404
PspPI	GGNCC	2 cut(s)	258, 478
PsuI	RGATCY	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	658
SacI	GAGCTC	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	5 cut(s)	126, 135, 174, 540, 656
SatI	GCNGC	8 cut(s)	103, 106, 109, 246, 281, 347, 350, 393
Sau3AI	GATC	3 cut(s)	3, 67, 358
Sau96I	GGNCC	2 cut(s)	258, 478
SchI	GAGTC	4 cut(s)	38, 72, 496, 566
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	7 cut(s)	117, 135, 282, 344, 397, 404, 600
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	580
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	658
Sse9I	AATT	3 cut(s)	20, 249, 363
SsiI	CCGC	5 cut(s)	102, 105, 109, 163, 246
SstI	GAGCTC	1 cut(s)	404
TaaI	ACNGT	3 cut(s)	87, 121, 324
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	20, 249, 363
TauI	GCSGC	4 cut(s)	105, 108, 111, 248
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	5 cut(s)	126, 135, 174, 540, 656
Tru9I	TTAA	5 cut(s)	126, 135, 174, 540, 656
TscAI	CASTG	2 cut(s)	154, 432
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	4 cut(s)	280, 346, 349, 392
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	5 cut(s)	24, 29, 239, 459, 578
TspRI	CASTG	2 cut(s)	154, 432
VpaK11BI	GGWCC	1 cut(s)	478
VspI	ATTAAT	1 cut(s)	656
XapI	RAATTY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.