Prupe.7G040500_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0029086
Physical Location & Seq
Forward (+)
7545792 .. 7546879
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G040500.1

Sequence Viewer

Length: 558 bp
ATGATGATCAATGAAGGCAACGAATCTGCGGAGTCATTTCTTCATTGTCTTTCTCCTCATCAACAAGTTGATCAGTTTGAGTTCACACTGTCTTCGCCTATGTGCGGCGGCGGCGACTCCAAGGTGGTTAAGAAGCTTAACCACAATGCCAGTGAGCGCGAACGTCGCAAAAAGATCAACACTTTATATTCCACTCTTCGTTCCTTGTTTCCAGCACCAGATCAAATGCACGTGAAAGGACTGATTCAGAAAAAGGAAGAACTGTTATCAAGACTTCGTAGGTTGCAGCAGCAAGGAGATCCAATTTACAATGAGAAGCAAAGCAGAAGTGCAGCTTTTAGCTCGTTATCTGCTTCTGCATTTGCAGTGAGTTGGCTCAATGACAGAGAAGTAGTGCTTCAGATTTCTTCATATGTGGTCCAGAAGAGTCCATTATCACAAATCCTGGTTGATTTGGAAGAGCAGTGGCGGACCTGTGCAGGAGCAAGGAGCCTGGCCAAAACGACGTCGTTTGGGTCCAGGTTCTCTTTATTCAATTGGGTTTTGGGAATTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

186

Amino Acids

20.89

Weight (kDa)

9.24

Isoelectric Point (pI)

61.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029086)

Species Orthologous Gene IDs
prunus_persica Prupe.7G040300_v2.0.a1 Prupe.7G040500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 509
AccII CGCG 1 cut(s) 159
AciI CCGC 5 cut(s) 29, 105, 108, 111, 469
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 383
AcvI CACGTG 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 506
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 535
AjnI CCWGG 3 cut(s) 444, 492, 518
AluBI AGCT 3 cut(s) 136, 335, 342
AluI AGCT 3 cut(s) 136, 335, 342
AlwI GGATC 1 cut(s) 293
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 286, 289, 332
ApoI RAATTY 1 cut(s) 549
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 418, 471, 516
AvaII GGWCC 3 cut(s) 418, 471, 516
BalI TGGCCA 1 cut(s) 497
BbrPI CACGTG 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 298, 301, 344
BciT130I CCWGG 3 cut(s) 446, 494, 520
BclI TGATCA 2 cut(s) 6, 70
BisI GCNGC 6 cut(s) 106, 109, 112, 287, 290, 333
BlsI GCNGC 6 cut(s) 107, 110, 113, 288, 291, 334
Bme1390I CCNGG 3 cut(s) 446, 494, 520
Bme18I GGWCC 3 cut(s) 418, 471, 516
BmgT120I GGNCC 3 cut(s) 418, 471, 516
BmiI GGNNCC 2 cut(s) 491, 517
BmrFI CCNGG 3 cut(s) 446, 494, 520
BpiI GAAGAC 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 3 cut(s) 446, 494, 520
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 3 cut(s) 298, 301, 344
BsgI GTGCAG 2 cut(s) 351, 498
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 497
BslI CCNNNNNNNGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 497
Bsp143I GATC 5 cut(s) 6, 70, 174, 220, 298
BspACI CCGC 5 cut(s) 29, 105, 108, 111, 469
BspANI GGCC 1 cut(s) 497
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 491, 517
BspPI GGATC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 453
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 5 cut(s) 6, 70, 174, 220, 298
BssNI GRCGYC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 3 cut(s) 446, 494, 520
Bst4CI ACNGT 2 cut(s) 90, 264
Bst6I CTCTTC 3 cut(s) 201, 419, 453
BstACI GRCGYC 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 232
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 5 cut(s) 9, 73, 177, 223, 301
BstMBI GATC 5 cut(s) 6, 70, 174, 220, 298
BstMWI GCNNNNNNNGC 2 cut(s) 111, 165
BstNI CCWGG 3 cut(s) 446, 494, 520
BstSCI CCNGG 3 cut(s) 444, 492, 518
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 298, 301, 344
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 497
BtsI GCAGTG 2 cut(s) 372, 470
BtsIMutI CAGTG 4 cut(s) 86, 157, 372, 470
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 3 cut(s) 418, 471, 516
CviJI RGCY 6 cut(s) 136, 335, 342, 376, 492, 497
CviKI_1 RGCY 6 cut(s) 136, 335, 342, 376, 492, 497
DpnI GATC 5 cut(s) 8, 72, 176, 222, 300
DpnII GATC 5 cut(s) 6, 70, 174, 220, 298
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 3 cut(s) 201, 419, 453
EarI CTCTTC 3 cut(s) 201, 419, 453
EciI GGCGGA 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 120
Eco47I GGWCC 3 cut(s) 418, 471, 516
Eco57I CTGAAG 1 cut(s) 383
Eco72I CACGTG 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 549
EcoRII CCWGG 3 cut(s) 444, 492, 518
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaiI YATR 4 cut(s) 101, 187, 412, 414
FalI AAGNNNNNCTT 4 cut(s) 319, 351, 381, 413
FauNDI CATATG 1 cut(s) 412
FbaI TGATCA 2 cut(s) 6, 70
Fnu4HI GCNGC 6 cut(s) 106, 109, 112, 287, 290, 333
Fsp4HI GCNGC 6 cut(s) 106, 109, 112, 287, 290, 333
GlaI GCGC 1 cut(s) 158
GluI GCNGC 6 cut(s) 106, 109, 112, 287, 290, 333
HaeIII GGCC 1 cut(s) 497
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 506
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 5 cut(s) 23, 32, 116, 244, 427
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 249, 402
Hpy188III TCNNGA 2 cut(s) 270, 421
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 3 cut(s) 168, 508, 511
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 2 cut(s) 90, 264
HpyCH4IV ACGT 3 cut(s) 163, 231, 506
HpyCH4V TGCA 6 cut(s) 229, 286, 332, 359, 365, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 165
HpySE526I ACGT 3 cut(s) 163, 231, 506
Hsp92I GRCGYC 1 cut(s) 506
HspAI GCGC 1 cut(s) 157
Ksp22I TGATCA 2 cut(s) 6, 70
Kzo9I GATC 5 cut(s) 6, 70, 174, 220, 298
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 482, 489
Lsp1109I GCAGC 3 cut(s) 298, 301, 344
MaeII ACGT 3 cut(s) 163, 231, 506
MalI GATC 5 cut(s) 8, 72, 176, 222, 300
MboI GATC 5 cut(s) 6, 70, 174, 220, 298
MboII GAAGA 7 cut(s) 32, 84, 188, 269, 399, 436, 470
MfeI CAATTG 1 cut(s) 535
MflI RGATCY 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 3 cut(s) 303, 535, 549
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 3 cut(s) 41, 110, 436
MnlI CCTC 1 cut(s) 66
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 3 cut(s) 129, 138, 556
Msp20I TGGCCA 1 cut(s) 497
MspR9I CCNGG 3 cut(s) 446, 494, 520
MunI CAATTG 1 cut(s) 535
MvaI CCWGG 3 cut(s) 446, 494, 520
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 111, 165
NdeI CATATG 1 cut(s) 412
NdeII GATC 5 cut(s) 6, 70, 174, 220, 298
NlaIV GGNNCC 2 cut(s) 491, 517
PciSI GCTCTTC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 23, 244
PkrI GCNGC 6 cut(s) 107, 110, 113, 288, 291, 334
PleI GAGTC 3 cut(s) 40, 110, 435
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
PpsI GAGTC 3 cut(s) 40, 110, 435
Ppu21I YACGTR 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 444, 492, 518
PspCI CACGTG 1 cut(s) 232
PspGI CCWGG 3 cut(s) 444, 492, 518
PspN4I GGNNCC 2 cut(s) 491, 517
PspPI GGNCC 3 cut(s) 418, 471, 516
PsuI RGATCY 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 3 cut(s) 129, 138, 556
SatI GCNGC 6 cut(s) 106, 109, 112, 287, 290, 333
Sau3AI GATC 5 cut(s) 6, 70, 174, 220, 298
Sau96I GGNCC 3 cut(s) 418, 471, 516
SchI GAGTC 3 cut(s) 41, 110, 436
ScrFI CCNGG 3 cut(s) 446, 494, 520
SinI GGWCC 3 cut(s) 418, 471, 516
Sse9I AATT 3 cut(s) 303, 535, 549
SsiI CCGC 5 cut(s) 29, 105, 108, 111, 469
StyD4I CCNGG 3 cut(s) 444, 492, 518
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 90, 264
TaiI ACGT 3 cut(s) 166, 234, 509
TasI AATT 3 cut(s) 303, 535, 549
TauI GCSGC 3 cut(s) 108, 111, 114
TfiI GAWTC 2 cut(s) 23, 244
Tru1I TTAA 3 cut(s) 129, 138, 556
Tru9I TTAA 3 cut(s) 129, 138, 556
TscAI CASTG 4 cut(s) 93, 157, 372, 470
TseI GCWGC 3 cut(s) 286, 289, 332
TspDTI ATGAA 3 cut(s) 27, 32, 399
TspRI CASTG 4 cut(s) 93, 157, 372, 470
VpaK11BI GGWCC 3 cut(s) 418, 471, 516
XapI RAATTY 1 cut(s) 549
ZraI GACGTC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.