Prupe.7G107200_v2.0.a1

PAN-like domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
13571978 .. 13573364
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G107200.1

Sequence Viewer

Length: 537 bp
ATGCCAAACAGAAGCTTGGACACTCATCTATTTGATCCAGCGAGGAGACCTGAGCTTGATTGGGGCAGACGCTTCAATATTATTCAGTGTGTTGCTAGAGGGCTTCTTTATCTCCACCATGATTCGTATTTGAAGTATGCCACAGGAGGGATATTTTCTGAAAAATCTGATGTCTATAGCTTCGGGGTCTTGATATTGGCGATTATTAGCGGCAGGAACAATACCAGCTTCTATTACTTTGGAAAACATCTAGGTGTCCTAGCTTATCAGAGTCTAACAAGTCTAGCCAACATACTCGAAATTTTGTCGGGCATGGTACTGTGGAATGAAGGCAGGGGATATGACTTGGTTGATGAAGTATTGGCTGATTCATATTCCTCATCAGAAGTGATGAGATGTGTGCACACTGGGCTTCTCTGTTTACAAGACAAGACAATGCTGCAGATAGGCCAACCATGCCAGATGTATTTTTTTTTTTTTTTGTGTGTGGATATAAGTTGTGTGTTGTATTCATTGCAAAATTTAGCTTCAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

179

Amino Acids

20.21

Weight (kDa)

5.9

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024564)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 2 cut(s) 300, 520
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 2 cut(s) 76, 133
AluBI AGCT 6 cut(s) 15, 55, 180, 228, 263, 527
AluI AGCT 6 cut(s) 15, 55, 180, 228, 263, 527
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 40
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 448
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 2 cut(s) 300, 520
BaeGI GKGCMC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 4 cut(s) 96, 251, 260, 284
BfmI CTRYAG 2 cut(s) 175, 440
BisI GCNGC 2 cut(s) 211, 440
BlsI GCNGC 2 cut(s) 212, 441
BmrI ACTGGG 1 cut(s) 417
BmuI ACTGGG 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 512
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 1 cut(s) 426
BshFI GGCC 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 512
BsrI ACTGG 1 cut(s) 412
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 409, 456
BstSFI CTRYAG 2 cut(s) 175, 440
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 426
BsuRI GGCC 1 cut(s) 450
BtsIMutI CAGTG 2 cut(s) 92, 405
CseI GACGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 317
CviAII CATG 3 cut(s) 119, 313, 456
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 513
FaeI CATG 3 cut(s) 122, 316, 459
FatI CATG 3 cut(s) 118, 312, 455
Fnu4HI GCNGC 2 cut(s) 211, 440
Fsp4HI GCNGC 2 cut(s) 211, 440
FspBI CTAG 4 cut(s) 96, 251, 260, 284
GluI GCNGC 2 cut(s) 211, 440
HaeIII GGCC 1 cut(s) 450
HgaI GACGC 1 cut(s) 78
Hin1II CATG 3 cut(s) 122, 316, 459
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 3 cut(s) 122, 271, 368
Hpy166II GTNNAC 2 cut(s) 403, 422
Hpy188I TCNGA 4 cut(s) 160, 169, 270, 385
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 403, 422
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 403, 442, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 456
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 3 cut(s) 122, 316, 459
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 8 cut(s) 51, 63, 129, 199, 238, 319, 393, 473
Lsp1109I GCAGC 1 cut(s) 426
MaeI CTAG 4 cut(s) 96, 251, 260, 284
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 2 cut(s) 300, 520
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 4 cut(s) 36, 92, 140, 388
MslI CAYNNNNRTG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 409, 456
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 122, 316, 459
PfeI GAWTC 2 cut(s) 122, 368
PkrI GCNGC 2 cut(s) 212, 441
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 444
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 252
SatI GCNGC 2 cut(s) 211, 440
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 280
SduI GDGCHC 1 cut(s) 405
SetI ASST 8 cut(s) 17, 52, 57, 182, 230, 256, 265, 529
SfcI CTRYAG 2 cut(s) 175, 440
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 2 cut(s) 300, 520
SsiI CCGC 1 cut(s) 210
SspI AATATT 1 cut(s) 79
SspMI CTAG 4 cut(s) 96, 251, 260, 284
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 300, 520
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 2 cut(s) 122, 368
TscAI CASTG 2 cut(s) 92, 412
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 4 cut(s) 342, 360, 369, 501
TspRI CASTG 2 cut(s) 92, 412
VneI GTGCAC 1 cut(s) 401
XapI RAATTY 2 cut(s) 300, 520
XspI CTAG 4 cut(s) 96, 251, 260, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.