Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0024573

Physical Location & Seq

Genomic Coordinates Forward (+)

17707970 .. 17708900

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G181100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTAACCAGCAGAACACCACCACCAACAACACCAACCGCCTAGCCTCCTCCGCTGAGGGACAGCAGCAACCCGGTAACGACAACGTTAATGTTAACGTTACGGGTGTTGCTGCTACTGGTACTCCATCATTTCCAAACCCTCCCCCTCCGAGCACTGTTCAACTCAATGTTGCTAGAGGGTCATCTGTGAGTCCTCCTGGTCTCAATAGAGGACCATCTGGCAGAGGGTCATCCAACCCTAGGAGGGTTTCGCCCTCTGGCAGAAAGTCTCCTCCTGGTGGCAGAGGATCACCCTCTTCTGGGAGAGGGTCATCGTCCTTTGCCTCTTCCCCTGGAGCGGGACAAATCACTCAGATTGGTGGAAGAAATTTCACTCCTCTCAGTGTGGAAATCACTATAGGAGGAGGGTCAGGGACCGCAGGAGGGAGCATGATTCCTGGCAGCAGCAGCGGCTCGCCACCACGGGCCAAGCGCAAAGCGGAGATAACTGCCCCAGAAGGAGTGAGCCCGGTTTGCAGCGTATGCAAACGCTCAAACTTTTCCTCGTGGAAAGCATTGTTTGGGCACATGCGTTGCCACCCAGAGCGTCAATGGAGGGGCTGCTTCCCACCCCCAGGATTCGAAGAAGCACAGCGAGCCCTGCAACAAGGGGAAAGGCTCGGTGCGCTGCGTGGGTTTGATCTGAATGAGGCAAGTGATCCAGAAGAAGAAAATGAAGGTGGTGGCGGCGGCGGCTTCGACCTCAACATGCTTCCCCCAGACGAGGATAAGGATGGTGGCGGAAGTAGTGGTGGCGCTGCCAAGACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

272

Amino Acids

27.45

Weight (kDa)

9.33

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024573)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G181100_v2.0.a1
pyrus_communis	pycom02g09250 pycom15g20730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	341
AclI	AACGTT	2 cut(s)	87, 99
AclWI	GGATC	2 cut(s)	298, 695
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	5 cut(s)	199, 277, 334, 439, 616
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	2 cut(s)	209, 276
AlwI	GGATC	2 cut(s)	298, 695
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	9 cut(s)	67, 113, 444, 447, 450, 519, 603, 670, 800
ApoI	RAATTY	1 cut(s)	370
AspA2I	CCTAGG	1 cut(s)	242
AspLEI	GCGC	3 cut(s)	477, 670, 800
AspS9I	GGNCC	3 cut(s)	215, 417, 468
AsuC2I	CCSGG	2 cut(s)	75, 512
AsuHPI	GGTGA	1 cut(s)	285
AsuII	TTCGAA	1 cut(s)	624
AvaII	GGWCC	2 cut(s)	215, 417
AvrII	CCTAGG	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	570
BanII	GRGCYC	2 cut(s)	512, 643
BauI	CACGAG	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	9 cut(s)	79, 100, 456, 459, 462, 531, 590, 657, 787
BccI	CCATC	3 cut(s)	136, 226, 770
BciT130I	CCWGG	5 cut(s)	201, 279, 336, 441, 618
BcnI	CCSGG	2 cut(s)	75, 512
BcoDI	GTCTC	2 cut(s)	209, 276
BfaI	CTAG	3 cut(s)	44, 177, 243
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	801
BlnI	CCTAGG	1 cut(s)	242
Bme1390I	CCNGG	7 cut(s)	75, 201, 279, 336, 441, 512, 618
Bme18I	GGWCC	2 cut(s)	215, 417
BmgT120I	GGNCC	3 cut(s)	215, 417, 468
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	7 cut(s)	75, 201, 279, 336, 441, 512, 618
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	624
BpuMI	CCSGG	2 cut(s)	75, 512
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	242, 334, 464, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bse1I	ACTGG	2 cut(s)	124, 814
BseBI	CCWGG	5 cut(s)	201, 279, 336, 441, 618
BseDI	CCNNGG	4 cut(s)	242, 334, 464, 616
BseGI	GGATG	2 cut(s)	233, 781
BseMII	CTCAG	3 cut(s)	48, 368, 397
BseNI	ACTGG	2 cut(s)	124, 814
BseRI	GAGGAG	4 cut(s)	40, 264, 369, 420
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	9 cut(s)	79, 100, 456, 459, 462, 531, 590, 657, 787
BshFI	GGCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	75, 512
BslFI	GGGAC	3 cut(s)	75, 357, 430
BsmAI	GTCTC	2 cut(s)	209, 276
BsmFI	GGGAC	3 cut(s)	75, 357, 430
BsnI	GGCC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	624
Bsp1286I	GDGCHC	4 cut(s)	158, 512, 570, 643
Bsp143I	GATC	3 cut(s)	290, 682, 700
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	3 cut(s)	49, 367, 396
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	2 cut(s)	298, 695
BspT104I	TTCGAA	1 cut(s)	624
BspTNI	GGTCTC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	124, 814
BssECI	CCNNGG	4 cut(s)	242, 334, 464, 616
BssMI	GATC	3 cut(s)	290, 682, 700
BssSI	CACGAG	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	547
Bst2UI	CCWGG	5 cut(s)	201, 279, 336, 441, 618
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	304, 334
BstAPI	GCANNNNNTGC	1 cut(s)	525
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	458, 639
BstDEI	CTNAG	3 cut(s)	57, 354, 383
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	233, 781
BstH2I	RGCGCY	1 cut(s)	801
BstHHI	GCGC	3 cut(s)	477, 670, 800
BstKTI	GATC	3 cut(s)	293, 685, 703
BstMAI	GTCTC	2 cut(s)	209, 276
BstMBI	GATC	3 cut(s)	290, 682, 700
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 450, 453, 516, 525, 638, 643, 667, 735
BstNI	CCWGG	5 cut(s)	201, 279, 336, 441, 618
BstNSI	RCATGY	2 cut(s)	574, 754
BstSCI	CCNGG	7 cut(s)	73, 199, 277, 334, 439, 510, 616
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	570
BstV1I	GCAGC	9 cut(s)	79, 100, 456, 459, 462, 531, 590, 657, 787
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	233, 781
BtsIMutI	CAGTG	2 cut(s)	156, 391
Cac8I	GCNNGC	2 cut(s)	458, 639
CfoI	GCGC	3 cut(s)	477, 670, 800
Cfr13I	GGNCC	3 cut(s)	215, 417, 468
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	3 cut(s)	433, 571, 751
CviJI	RGCY	9 cut(s)	5, 47, 456, 470, 510, 603, 641, 661, 738
CviKI_1	RGCY	9 cut(s)	5, 47, 456, 470, 510, 603, 641, 661, 738
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	3 cut(s)	57, 354, 383
DpnI	GATC	3 cut(s)	292, 684, 702
DpnII	GATC	3 cut(s)	290, 682, 700
Eam1104I	CTCTTC	2 cut(s)	304, 334
EarI	CTCTTC	2 cut(s)	304, 334
EciI	GGCGGA	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	2 cut(s)	512, 643
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	215, 417
EcoRII	CCWGG	5 cut(s)	199, 277, 334, 439, 616
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	2 cut(s)	512, 643
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	3 cut(s)	436, 574, 754
FaiI	YATR	5 cut(s)	401, 434, 526, 572, 752
FaqI	GGGAC	3 cut(s)	75, 357, 430
FatI	CATG	3 cut(s)	432, 570, 750
FauI	CCCGC	1 cut(s)	334
FokI	GGATG	2 cut(s)	220, 788
FriOI	GRGCYC	2 cut(s)	512, 643
FspBI	CTAG	3 cut(s)	44, 177, 243
GlaI	GCGC	3 cut(s)	476, 669, 799
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	801
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	2 cut(s)	75, 512
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	3 cut(s)	477, 670, 800
Hin1II	CATG	3 cut(s)	436, 574, 754
Hin6I	GCGC	3 cut(s)	475, 668, 798
HinP1I	GCGC	3 cut(s)	475, 668, 798
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	193, 436, 621
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	75, 512
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	153, 357, 687
Hpy188III	TCNNGA	1 cut(s)	704
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	494, 713
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	87, 99
HpyCH4V	TGCA	3 cut(s)	519, 528, 646
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 450, 453, 516, 525, 638, 643, 667, 735
HpyF3I	CTNAG	3 cut(s)	57, 354, 383
HpySE526I	ACGT	2 cut(s)	87, 99
Hsp92II	CATG	3 cut(s)	436, 574, 754
HspAI	GCGC	3 cut(s)	475, 668, 798
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	290, 682, 700
LmnI	GCTCC	2 cut(s)	338, 429
Lsp1109I	GCAGC	9 cut(s)	79, 100, 456, 459, 462, 531, 590, 657, 787
MaeI	CTAG	3 cut(s)	44, 177, 243
MaeII	ACGT	2 cut(s)	87, 99
MaeIII	GTNAC	2 cut(s)	77, 100
MalI	GATC	3 cut(s)	292, 684, 702
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	3 cut(s)	290, 682, 700
MboII	GAAGA	6 cut(s)	291, 321, 378, 638, 719, 722
MhlI	GDGCHC	4 cut(s)	158, 512, 570, 643
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	261
MseI	TTAA	3 cut(s)	90, 96, 814
MspA1I	CMGCKG	2 cut(s)	56, 453
MspI	CCGG	2 cut(s)	75, 512
MspR9I	CCNGG	7 cut(s)	75, 201, 279, 336, 441, 512, 618
MvaI	CCWGG	5 cut(s)	201, 279, 336, 441, 618
MwoI	GCNNNNNNNGC	9 cut(s)	53, 450, 453, 516, 525, 638, 643, 667, 735
NciI	CCSGG	2 cut(s)	75, 512
NdeII	GATC	3 cut(s)	290, 682, 700
NlaIII	CATG	3 cut(s)	436, 574, 754
NlaIV	GGNNCC	1 cut(s)	418
NspI	RCATGY	2 cut(s)	574, 754
NspV	TTCGAA	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	436, 621
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp1406I	AACGTT	2 cut(s)	87, 99
Psp6I	CCWGG	5 cut(s)	199, 277, 334, 439, 616
PspGI	CCWGG	5 cut(s)	199, 277, 334, 439, 616
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	3 cut(s)	215, 417, 468
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	90, 96, 814
Sau3AI	GATC	3 cut(s)	290, 682, 700
Sau96I	GGNCC	3 cut(s)	215, 417, 468
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	7 cut(s)	75, 201, 279, 336, 441, 512, 618
SduI	GDGCHC	4 cut(s)	158, 512, 570, 643
SetI	ASST	4 cut(s)	90, 102, 724, 747
SfcI	CTRYAG	1 cut(s)	399
SfuI	TTCGAA	1 cut(s)	624
SinI	GGWCC	2 cut(s)	215, 417
Sse9I	AATT	1 cut(s)	370
SspMI	CTAG	3 cut(s)	44, 177, 243
StyD4I	CCNGG	7 cut(s)	73, 199, 277, 334, 439, 510, 616
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	2 cut(s)	90, 102
TaqI	TCGA	2 cut(s)	624, 741
TasI	AATT	1 cut(s)	370
TauI	GCSGC	4 cut(s)	456, 732, 735, 738
TfiI	GAWTC	2 cut(s)	436, 621
Tru1I	TTAA	3 cut(s)	90, 96, 814
Tru9I	TTAA	3 cut(s)	90, 96, 814
TscAI	CASTG	2 cut(s)	163, 391
TseI	GCWGC	9 cut(s)	67, 113, 444, 447, 450, 519, 603, 670, 800
TspDTI	ATGAA	1 cut(s)	732
TspRI	CASTG	2 cut(s)	163, 391
VpaK11BI	GGWCC	2 cut(s)	215, 417
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	2 cut(s)	574, 754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XmaJI	CCTAGG	1 cut(s)	242
XspI	CTAG	3 cut(s)	44, 177, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.