Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0024573

Physical Location & Seq

Genomic Coordinates Reverse (-)

6354691 .. 6355785

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACTAACCCCAAGGACACCACCACCGCCACCAACCAGGGCTCCTCCGCCGAGGGACAGCAACCACGTAACGAGAACATTAGCTCCAACGTTACTGGGGCTGCTCCTACTGAACCACCAAGTCCTCCTGCGCCGACTCCTGCCCCTCCTAGCACTGGTCAAGTCAATATGGGATCAGGAGGGTTCGGTGGATTCGTTGTCAGAGGGTCCTCTGGGTCTCCTCCTGTTCGTACTCCTCCTACCTCTGGTCAATTCAATGTGGGAGGAGGGTCTGCTACCGGAGGGCCCTCTCTGACTCCTTCTACACCCAACAGAGGACTTCCTGGTCGTGCGTCACCCTCTCCTGGTAGGGGGACATCCACCCCAAGAAGGGGCGCACGCTCTGGTGGCCGGAGGAGTCCCAGCAGGGGATCACCCTCTGGCGAAAAATCTCCTCCTAGCGGGAGAGGATCGCCCTCTTTTGTAGGGAGAGGGTCGTCCTCGGCCCCTCCTTCTCCAGCGGGAAACATCACTCAAATTGGTGGGAGTAGTTTCGCTCCCGTCAGCGTTGAAATATCTTTAGGAGTTGGACTTGCGGTAGCGGGGAGCACGGCCGCCGGTGGCCAGCCAGGCAAGCGCAAAGCCGAAGTCAATGCCCCGGAAGGAGTGACTCCGACTTGCCCCGTGTGCAAACGGTCGGATTTCAGTTCGTGGAAAGCATTGTTTGGGCATCTGCGTAGCCACCCAGAGCGTGGCTATAGGGGCGCCTTCCCACCCCCAGGACACCAACAAGAGGAAGCAAGTAATGCTGCTGCTAATGTTATACGTGGATTCGATCTCAACGAAGCCGTCGATGTGGAGGAGGACAATGAAGGCGGCGGTGGATTTGACCTGAACATGCCCGCGGTGGAGGATGATCATGGTGTTCCTGATGACAACGTGGATGGTGGTGACGCTGGTGGTGCTGCTGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

319

Amino Acids

31.46

Weight (kDa)

6.12

Isoelectric Point (pI)

67.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024573)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G181100_v2.0.a1
pyrus_communis	pycom02g09250 pycom15g20730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	743
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccII	CGCG	1 cut(s)	884
AclI	AACGTT	1 cut(s)	90
AclWI	GGATC	3 cut(s)	181, 418, 457
AcoI	YGGCCR	3 cut(s)	388, 591, 601
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	256, 551
AjnI	CCWGG	5 cut(s)	36, 322, 343, 607, 757
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw21I	GWGCWC	1 cut(s)	590
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	3 cut(s)	181, 418, 457
AoxI	GGCC	5 cut(s)	284, 388, 483, 591, 601
ApaI	GGGCCC	1 cut(s)	288
ApeKI	GCWGC	4 cut(s)	101, 788, 791, 944
ArsI	GACNNNNNNTTYG	2 cut(s)	612, 644
AspLEI	GCGC	4 cut(s)	133, 377, 618, 746
AspS9I	GGNCC	4 cut(s)	207, 284, 285, 484
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	3 cut(s)	327, 405, 941
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	743
BanII	GRGCYC	2 cut(s)	44, 288
Bbv12I	GWGCWC	1 cut(s)	590
BbvCI	CCTCAGC	1 cut(s)	948
BbvI	GCAGC	4 cut(s)	88, 775, 778, 931
BccI	CCATC	1 cut(s)	917
BceAI	ACGGC	2 cut(s)	606, 812
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	5 cut(s)	38, 324, 345, 609, 759
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	150, 438
BfmI	CTRYAG	1 cut(s)	736
BfoI	RGCGCY	1 cut(s)	747
BglI	GCCNNNNNGGC	1 cut(s)	609
BisI	GCNGC	6 cut(s)	102, 594, 789, 792, 856, 945
BlsI	GCNGC	6 cut(s)	103, 595, 790, 793, 857, 946
Bme1390I	CCNGG	6 cut(s)	38, 324, 345, 609, 638, 759
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	4 cut(s)	207, 284, 285, 484
BmiI	GGNNCC	5 cut(s)	43, 208, 286, 486, 745
BmrFI	CCNGG	6 cut(s)	38, 324, 345, 609, 638, 759
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	718
BmuI	ACTGGG	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	948
BpuMI	CCSGG	1 cut(s)	638
BsaAI	YACGTR	2 cut(s)	68, 806
BsaHI	GRCGYC	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	7 cut(s)	12, 37, 51, 480, 636, 757, 882
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 68, 98
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	100, 160
BseBI	CCWGG	5 cut(s)	38, 324, 345, 609, 759
BseDI	CCNNGG	7 cut(s)	12, 37, 51, 480, 636, 757, 882
BseGI	GGATG	3 cut(s)	356, 898, 928
BseMII	CTCAG	1 cut(s)	939
BseNI	ACTGG	2 cut(s)	100, 160
BseRI	GAGGAG	7 cut(s)	34, 210, 225, 279, 409, 423, 854
BseSI	GKGCMC	1 cut(s)	288
BseX3I	CGGCCG	1 cut(s)	591
BseXI	GCAGC	4 cut(s)	88, 775, 778, 931
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	884
Bsh1285I	CGRYCG	2 cut(s)	594, 677
BshFI	GGCC	5 cut(s)	286, 390, 485, 593, 603
BshNI	GGYRCC	1 cut(s)	743
BsiEI	CGRYCG	2 cut(s)	594, 677
BsiHKAI	GWGCWC	1 cut(s)	590
BsiSI	CCGG	4 cut(s)	279, 391, 597, 638
BslFI	GGGAC	3 cut(s)	69, 367, 384
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	3 cut(s)	69, 367, 384
BsnI	GGCC	5 cut(s)	286, 390, 485, 593, 603
Bso31I	GGTCTC	1 cut(s)	222
Bsp120I	GGGCCC	1 cut(s)	284
Bsp1286I	GDGCHC	3 cut(s)	44, 288, 590
Bsp143I	GATC	5 cut(s)	173, 410, 449, 814, 895
BspANI	GGCC	5 cut(s)	286, 390, 485, 593, 603
BspCNI	CTCAG	1 cut(s)	940
BspFNI	CGCG	1 cut(s)	884
BspLI	GGNNCC	5 cut(s)	43, 208, 286, 486, 745
BspPI	GGATC	3 cut(s)	181, 418, 457
BspT107I	GGYRCC	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	100, 160
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	7 cut(s)	12, 37, 51, 480, 636, 757, 882
BssMI	GATC	5 cut(s)	173, 410, 449, 814, 895
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	5 cut(s)	38, 324, 345, 609, 759
Bst4CI	ACNGT	1 cut(s)	675
BstACI	GRCGYC	1 cut(s)	744
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBAI	YACGTR	2 cut(s)	68, 806
BstC8I	GCNNGC	4 cut(s)	379, 605, 614, 882
BstDEI	CTNAG	2 cut(s)	948, 954
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	3 cut(s)	356, 898, 928
BstFNI	CGCG	1 cut(s)	884
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	4 cut(s)	133, 377, 618, 746
BstKTI	GATC	5 cut(s)	176, 413, 452, 817, 898
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	5 cut(s)	173, 410, 449, 814, 895
BstMCI	CGRYCG	2 cut(s)	594, 677
BstMWI	GCNNNNNNNGC	8 cut(s)	387, 609, 613, 666, 741, 785, 941, 950
BstNI	CCWGG	5 cut(s)	38, 324, 345, 609, 759
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	6 cut(s)	36, 322, 343, 607, 636, 757
BstSFI	CTRYAG	1 cut(s)	736
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	4 cut(s)	88, 775, 778, 931
BstZI	CGGCCG	1 cut(s)	591
BsuRI	GGCC	5 cut(s)	286, 390, 485, 593, 603
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	3 cut(s)	356, 898, 928
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	4 cut(s)	379, 605, 614, 882
CfoI	GCGC	4 cut(s)	133, 377, 618, 746
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	4 cut(s)	207, 284, 285, 484
Cfr42I	CCGCGG	1 cut(s)	885
CseI	GACGC	2 cut(s)	321, 941
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	877, 899
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	2 cut(s)	948, 954
DinI	GGCGCC	1 cut(s)	745
DpnI	GATC	5 cut(s)	175, 412, 451, 816, 897
DpnII	GATC	5 cut(s)	173, 410, 449, 814, 895
DrdI	GACNNNNNNGTC	1 cut(s)	324
DseDI	GACNNNNNNGTC	1 cut(s)	324
EaeI	YGGCCR	3 cut(s)	388, 591, 601
EagI	CGGCCG	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	37
EclXI	CGGCCG	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	2 cut(s)	44, 288
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	207
Eco52I	CGGCCG	1 cut(s)	591
EcoO109I	RGGNCCY	3 cut(s)	207, 284, 285
EcoRII	CCWGG	5 cut(s)	36, 322, 343, 607, 757
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	2 cut(s)	44, 288
EgeI	GGCGCC	1 cut(s)	745
EheI	GGCGCC	1 cut(s)	745
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	880, 902
FaiI	YATR	5 cut(s)	170, 738, 803, 878, 900
FaqI	GGGAC	3 cut(s)	69, 367, 384
FatI	CATG	2 cut(s)	876, 898
FauI	CCCGC	4 cut(s)	434, 493, 574, 889
FbaI	TGATCA	1 cut(s)	895
Fnu4HI	GCNGC	6 cut(s)	102, 594, 789, 792, 856, 945
FokI	GGATG	3 cut(s)	343, 905, 935
FriOI	GRGCYC	2 cut(s)	44, 288
Fsp4HI	GCNGC	6 cut(s)	102, 594, 789, 792, 856, 945
FspBI	CTAG	2 cut(s)	150, 438
GlaI	GCGC	4 cut(s)	132, 376, 617, 745
GluI	GCNGC	6 cut(s)	102, 594, 789, 792, 856, 945
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	480
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	5 cut(s)	286, 390, 485, 593, 603
HapII	CCGG	4 cut(s)	279, 391, 597, 638
HgaI	GACGC	2 cut(s)	321, 941
HhaI	GCGC	4 cut(s)	133, 377, 618, 746
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	2 cut(s)	880, 902
Hin6I	GCGC	4 cut(s)	131, 375, 616, 744
HinP1I	GCGC	4 cut(s)	131, 375, 616, 744
HinfI	GANTC	6 cut(s)	136, 192, 295, 397, 649, 810
HpaII	CCGG	4 cut(s)	279, 391, 597, 638
HphI	GGTGA	3 cut(s)	327, 405, 941
Hpy188I	TCNGA	4 cut(s)	203, 294, 654, 679
Hpy188III	TCNNGA	2 cut(s)	177, 908
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	6 cut(s)	309, 363, 501, 635, 757, 845
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4IV	ACGT	4 cut(s)	67, 90, 805, 918
HpyCH4V	TGCA	1 cut(s)	669
HpyF10VI	GCNNNNNNNGC	8 cut(s)	387, 609, 613, 666, 741, 785, 941, 950
HpyF3I	CTNAG	2 cut(s)	948, 954
HpySE526I	ACGT	4 cut(s)	67, 90, 805, 918
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	2 cut(s)	880, 902
HspAI	GCGC	4 cut(s)	131, 375, 616, 744
KasI	GGCGCC	1 cut(s)	743
Ksp22I	TGATCA	1 cut(s)	895
KspI	CCGCGG	1 cut(s)	885
Kzo9I	GATC	5 cut(s)	173, 410, 449, 814, 895
LmnI	GCTCC	5 cut(s)	47, 89, 109, 541, 585
Lsp1109I	GCAGC	4 cut(s)	88, 775, 778, 931
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	2 cut(s)	150, 438
MaeII	ACGT	4 cut(s)	67, 90, 805, 918
MaeIII	GTNAC	5 cut(s)	68, 91, 333, 646, 929
MalI	GATC	5 cut(s)	175, 412, 451, 816, 897
MboI	GATC	5 cut(s)	173, 410, 449, 814, 895
MhlI	GDGCHC	3 cut(s)	44, 288, 590
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	2 cut(s)	251, 516
MluNI	TGGCCA	1 cut(s)	603
Mly113I	GGCGCC	1 cut(s)	744
MlyI	GAGTC	4 cut(s)	130, 289, 406, 643
MmeI	TCCRAC	4 cut(s)	111, 547, 657, 677
Mox20I	TGGCCA	1 cut(s)	603
MscI	TGGCCA	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	603
MspA1I	CMGCKG	2 cut(s)	500, 884
MspI	CCGG	4 cut(s)	279, 391, 597, 638
MspR9I	CCNGG	6 cut(s)	38, 324, 345, 609, 638, 759
MvaI	CCWGG	5 cut(s)	38, 324, 345, 609, 759
MvnI	CGCG	1 cut(s)	884
MwoI	GCNNNNNNNGC	8 cut(s)	387, 609, 613, 666, 741, 785, 941, 950
NarI	GGCGCC	1 cut(s)	744
NciI	CCSGG	1 cut(s)	638
NdeII	GATC	5 cut(s)	173, 410, 449, 814, 895
NlaIII	CATG	2 cut(s)	880, 902
NlaIV	GGNNCC	5 cut(s)	43, 208, 286, 486, 745
NmeAIII	GCCGAG	2 cut(s)	76, 461
NmuCI	GTSAC	3 cut(s)	333, 646, 929
NspI	RCATGY	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 819, 828
PfeI	GAWTC	2 cut(s)	192, 810
PflMI	CCANNNNNTGG	1 cut(s)	731
PkrI	GCNGC	6 cut(s)	103, 595, 790, 793, 857, 946
PleI	GAGTC	4 cut(s)	130, 289, 405, 643
PluTI	GGCGCC	1 cut(s)	747
PpsI	GAGTC	4 cut(s)	130, 289, 405, 643
Ppu21I	YACGTR	2 cut(s)	68, 806
PpuMI	RGGWCCY	1 cut(s)	207
Psp1406I	AACGTT	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	5 cut(s)	36, 322, 343, 607, 757
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	5 cut(s)	36, 322, 343, 607, 757
PspN4I	GGNNCC	5 cut(s)	43, 208, 286, 486, 745
PspOMI	GGGCCC	1 cut(s)	284
PspPI	GGNCC	4 cut(s)	207, 284, 285, 484
PspPPI	RGGWCCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	885
SatI	GCNGC	6 cut(s)	102, 594, 789, 792, 856, 945
Sau3AI	GATC	5 cut(s)	173, 410, 449, 814, 895
Sau96I	GGNCC	4 cut(s)	207, 284, 285, 484
SchI	GAGTC	4 cut(s)	130, 289, 406, 643
ScrFI	CCNGG	6 cut(s)	38, 324, 345, 609, 638, 759
SduI	GDGCHC	3 cut(s)	44, 288, 590
SetI	ASST	7 cut(s)	70, 86, 93, 245, 808, 873, 921
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	1 cut(s)	736
SfoI	GGCGCC	1 cut(s)	745
Sfr303I	CCGCGG	1 cut(s)	885
SgrAI	CRCCGGYG	1 cut(s)	596
SgrBI	CCGCGG	1 cut(s)	885
SinI	GGWCC	1 cut(s)	207
Sse9I	AATT	2 cut(s)	251, 516
SspDI	GGCGCC	1 cut(s)	743
SspMI	CTAG	2 cut(s)	150, 438
StyD4I	CCNGG	6 cut(s)	36, 322, 343, 607, 636, 757
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	675
TaiI	ACGT	4 cut(s)	70, 93, 808, 921
TaqI	TCGA	2 cut(s)	813, 831
TasI	AATT	2 cut(s)	251, 516
TauI	GCSGC	2 cut(s)	596, 858
TfiI	GAWTC	2 cut(s)	192, 810
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	3 cut(s)	333, 646, 929
TseI	GCWGC	4 cut(s)	101, 788, 791, 944
Tsp45I	GTSAC	3 cut(s)	333, 646, 929
TspDTI	ATGAA	1 cut(s)	864
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	207
XceI	RCATGY	1 cut(s)	880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	728
XspI	CTAG	2 cut(s)	150, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.