Prupe.7G189900_v2.0.a1

Staphylococcal nuclease domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0029095
Physical Location & Seq
Forward (+)
18211297 .. 18212844
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G189900.1

Sequence Viewer

Length: 747 bp
ATGCTAGATGTAAAGGCTCTGGATCGGGTGCATGTTCAATTGGAGTATTCAAGGAAGTCCCGCTACGGATCAGTCTTCCTTGGTTCTGCTCTTGACAGCGGGAATGTTTCTGAGTTGGTCGTGGACACTGTTTTGGGACGTAATGATATTGAGGTGACATCAAATTATTATGATGCCTGTTGTACTGTGGAATCATCTGCCATTCTTAATAAGAAAGCAATGCATTCTGGCGTGGATCCTCCGGTCATAATAGACTTGTCAAATGCAACATGGAAGGAAGTTGGGAAAGCCTGTGATAATATATTTGTATGGGCCTTTGATGAATACGAGAAAGTTGAGGGTTTTGTGGAATCTGTTATCCGTACTAACAGTGACACCAAGGATAAAATTATACTATTGATTCAACGCAATAAGAAAACATGGAAGATTGCCTTCTCACTTTATCATATCGCATGCCCCAGAGGTGAGGAGCCCTATGCAGATGAAGCATTTGAACTGCTGAGGCAAACCTTAGTTCACAAAAGGGTGGAGGTTCTGCTGGAGACTATTGATTCAGATGGATATTTTATGGGAGCTTTATTGGAGTCAAATACCCATGTGGAAATCCCCCTCCTTAAAGCCGGCCTTGCAAAATTGGAACCAGGTCCAAGCTATCACGTGGAATTTTGTCGTGCTCAGGACTCTGCAATAACGAAGAAACTGAAAATTTGGGAGAATAATGTTGAACCATATAGAAACTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05169 ko05203 map05169 map05203
Pfam Domains
Protein Families
SNase TUDOR

Protein Analysis

249

Amino Acids

28.08

Weight (kDa)

5.35

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029095)

Species Orthologous Gene IDs
prunus_persica Prupe.7G189900_v2.0.a1 Prupe.7G190200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 61, 99
AclWI GGATC 4 cut(s) 30, 76, 230, 243
AcsI RAATTY 2 cut(s) 662, 705
AcvI CACGTG 1 cut(s) 658
AfaI GTAC 2 cut(s) 184, 364
AgsI TTSAA 5 cut(s) 38, 51, 404, 494, 725
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 2 cut(s) 575, 651
AluI AGCT 2 cut(s) 575, 651
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 4 cut(s) 30, 76, 230, 243
AoxI GGCC 2 cut(s) 312, 622
ApoI RAATTY 2 cut(s) 662, 705
AspS9I GGNCC 2 cut(s) 312, 644
AsuHPI GGTGA 2 cut(s) 166, 476
AvaII GGWCC 1 cut(s) 644
BamHI GGATCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 474
BarI GAAGNNNNNNTAC 2 cut(s) 47, 79
BbrPI CACGTG 1 cut(s) 658
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 676
BbvCI CCTCAGC 1 cut(s) 500
BccI CCATC 1 cut(s) 551
BciT130I CCWGG 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 2 cut(s) 5, 745
Bme1390I CCNGG 1 cut(s) 642
Bme18I GGWCC 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 312, 644
BmiI GGNNCC 3 cut(s) 237, 471, 639
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 560
Bpu10I CCTNAGC 2 cut(s) 500, 675
BsaAI YACGTR 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 79, 378
BsaWI WCCGGW 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 2 cut(s) 79, 378
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 3 cut(s) 102, 491, 689
BseRI GAGGAG 1 cut(s) 482
BshFI GGCC 2 cut(s) 314, 624
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 2 cut(s) 242, 621
BslFI GGGAC 2 cut(s) 43, 150
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 2 cut(s) 43, 150
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 314, 624
Bsp1286I GDGCHC 2 cut(s) 474, 676
Bsp143I GATC 3 cut(s) 22, 68, 235
BspACI CCGC 2 cut(s) 61, 99
BspANI GGCC 2 cut(s) 314, 624
BspCNI CTCAG 3 cut(s) 103, 492, 688
BspLI GGNNCC 3 cut(s) 237, 471, 639
BspPI GGATC 4 cut(s) 30, 76, 230, 243
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 620
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 2 cut(s) 79, 378
BssMI GATC 3 cut(s) 22, 68, 235
BssT1I CCWWGG 2 cut(s) 79, 378
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 3 cut(s) 130, 187, 371
BstBAI YACGTR 1 cut(s) 658
BstC8I GCNNGC 2 cut(s) 454, 622
BstDEI CTNAG 4 cut(s) 111, 500, 511, 675
BstKTI GATC 3 cut(s) 25, 71, 238
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 22, 68, 235
BstMWI GCNNNNNNNGC 2 cut(s) 485, 626
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 2 cut(s) 35, 456
BstSCI CCNGG 1 cut(s) 640
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 2 cut(s) 314, 624
BtsIMutI CAGTG 2 cut(s) 126, 376
Cac8I GCNNGC 2 cut(s) 454, 622
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 2 cut(s) 312, 644
CsiI ACCWGGT 1 cut(s) 640
Csp6I GTAC 2 cut(s) 183, 363
CviAII CATG 5 cut(s) 32, 270, 420, 453, 596
CviJI RGCY 8 cut(s) 17, 290, 314, 472, 575, 620, 624, 651
CviKI_1 RGCY 8 cut(s) 17, 290, 314, 472, 575, 620, 624, 651
CviQI GTAC 2 cut(s) 183, 363
DdeI CTNAG 4 cut(s) 111, 500, 511, 675
DpnI GATC 3 cut(s) 24, 70, 237
DpnII GATC 3 cut(s) 22, 68, 235
Eco130I CCWWGG 2 cut(s) 79, 378
Eco24I GRGCYC 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 644
Eco72I CACGTG 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 79, 378
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 2 cut(s) 79, 378
FaeI CATG 5 cut(s) 35, 273, 423, 456, 599
FalI AAGNNNNNCTT 4 cut(s) 416, 448, 609, 641
FaqI GGGAC 2 cut(s) 43, 150
FatI CATG 5 cut(s) 31, 269, 419, 452, 595
FauI CCCGC 2 cut(s) 68, 92
FriOI GRGCYC 1 cut(s) 474
FspBI CTAG 2 cut(s) 5, 745
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 2 cut(s) 314, 624
HapII CCGG 2 cut(s) 242, 621
Hin1II CATG 5 cut(s) 35, 273, 423, 456, 599
HinfI GANTC 6 cut(s) 191, 350, 400, 551, 584, 680
HpaII CCGG 2 cut(s) 242, 621
HphI GGTGA 2 cut(s) 166, 476
Hpy166II GTNNAC 2 cut(s) 124, 517
Hpy188I TCNGA 2 cut(s) 112, 556
Hpy188III TCNNGA 3 cut(s) 20, 92, 677
Hpy8I GTNNAC 2 cut(s) 124, 517
HpyAV CCTTC 2 cut(s) 268, 442
HpyCH4III ACNGT 3 cut(s) 130, 187, 371
HpyCH4IV ACGT 2 cut(s) 139, 657
HpyCH4V TGCA 6 cut(s) 31, 223, 266, 479, 629, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 626
HpyF3I CTNAG 4 cut(s) 111, 500, 511, 675
HpySE526I ACGT 2 cut(s) 139, 657
Hsp92II CATG 5 cut(s) 35, 273, 423, 456, 599
KroI GCCGGC 1 cut(s) 620
KroNI GCCGGC 1 cut(s) 622
Kzo9I GATC 3 cut(s) 22, 68, 235
LmnI GCTCC 2 cut(s) 469, 572
LweI GCATC 1 cut(s) 163
MabI ACCWGGT 1 cut(s) 640
MaeI CTAG 2 cut(s) 5, 745
MaeII ACGT 2 cut(s) 139, 657
MaeIII GTNAC 2 cut(s) 154, 371
MalI GATC 3 cut(s) 24, 70, 237
MboI GATC 3 cut(s) 22, 68, 235
MboII GAAGA 3 cut(s) 67, 436, 706
MfeI CAATTG 1 cut(s) 38
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 474, 676
MluCI AATT 6 cut(s) 38, 163, 387, 632, 662, 705
MlyI GAGTC 2 cut(s) 593, 674
MnlI CCTC 8 cut(s) 145, 249, 331, 455, 460, 495, 523, 620
Mph1103I ATGCAT 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 620
MseI TTAA 2 cut(s) 207, 615
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 2 cut(s) 242, 621
MspR9I CCNGG 1 cut(s) 642
MunI CAATTG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 2 cut(s) 485, 626
NaeI GCCGGC 1 cut(s) 622
NdeII GATC 3 cut(s) 22, 68, 235
NgoMIV GCCGGC 1 cut(s) 620
NlaIII CATG 5 cut(s) 35, 273, 423, 456, 599
NlaIV GGNNCC 3 cut(s) 237, 471, 639
NmuCI GTSAC 2 cut(s) 154, 371
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 2 cut(s) 35, 456
PaeI GCATGC 1 cut(s) 456
PctI GAATGC 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 622
PfeI GAWTC 4 cut(s) 191, 350, 400, 551
PleI GAGTC 2 cut(s) 592, 674
PmaCI CACGTG 1 cut(s) 658
PmlI CACGTG 1 cut(s) 658
PpsI GAGTC 2 cut(s) 592, 674
Ppu21I YACGTR 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 640
PspCI CACGTG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 3 cut(s) 237, 471, 639
PspPI GGNCC 2 cut(s) 312, 644
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 2 cut(s) 184, 364
RsaNI GTAC 2 cut(s) 183, 363
SaqAI TTAA 2 cut(s) 207, 615
Sau3AI GATC 3 cut(s) 22, 68, 235
Sau96I GGNCC 2 cut(s) 312, 644
SchI GAGTC 2 cut(s) 593, 674
ScrFI CCNGG 1 cut(s) 642
SduI GDGCHC 2 cut(s) 474, 676
SetI ASST 9 cut(s) 142, 156, 466, 512, 534, 577, 646, 653, 660
SexAI ACCWGGT 1 cut(s) 640
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 644
SphI GCATGC 1 cut(s) 456
Sse9I AATT 6 cut(s) 38, 163, 387, 632, 662, 705
SsiI CCGC 2 cut(s) 61, 99
SspMI CTAG 2 cut(s) 5, 745
StyD4I CCNGG 1 cut(s) 640
StyI CCWWGG 2 cut(s) 79, 378
TaaI ACNGT 3 cut(s) 130, 187, 371
TaiI ACGT 2 cut(s) 142, 660
TasI AATT 6 cut(s) 38, 163, 387, 632, 662, 705
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 4 cut(s) 191, 350, 400, 551
Tru1I TTAA 2 cut(s) 207, 615
Tru9I TTAA 2 cut(s) 207, 615
TscAI CASTG 2 cut(s) 133, 376
TseFI GTSAC 2 cut(s) 154, 371
Tsp45I GTSAC 2 cut(s) 154, 371
TspDTI ATGAA 2 cut(s) 336, 498
TspGWI ACGGA 2 cut(s) 81, 350
TspRI CASTG 2 cut(s) 133, 376
VpaK11BI GGWCC 1 cut(s) 644
XapI RAATTY 2 cut(s) 662, 705
XceI RCATGY 2 cut(s) 35, 456
XspI CTAG 2 cut(s) 5, 745
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.