Prupe.8G006200_v2.0.a1

cellular response to nitrogen starvation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0021223
Physical Location & Seq
Reverse (-)
506392 .. 507064
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G006200.1

Sequence Viewer

Length: 351 bp
ATGAATATATACAAACACCGCATTATTTTAGATGCTGGGGAATTGAGGGAGAAACATCCAAATTGTATACCACTGACTCTGGAAAAGGATCCAAGGAGTGACATTCCTGACACAGACATGAAGAAATTCCTAGAGTATGGTGATATGCCTCTTCGAGATTTTGTTTCTTTTATTCGGACGCGTATCAGAGTCAGCAGGAAAAAACGTATATTTGTCTTTTGCAGGAACACTGAACCTCCATTTGATGCCTTGATGTCTACCATCGATGAGGAAAATAAGGATGAAGATGGATTTCTTCACATCACCTTCATTGGTGAAGGGAGAGTCTCTGGATCCAATGAAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.63

Weight (kDa)

5.63

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 67, 257
AccII CGCG 1 cut(s) 181
AciI CCGC 1 cut(s) 19
AclWI GGATC 4 cut(s) 83, 96, 327, 340
AcsI RAATTY 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 4 cut(s) 83, 96, 327, 340
ApoI RAATTY 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 152, 295, 326
BamHI GGATCC 2 cut(s) 88, 332
BccI CCATC 2 cut(s) 269, 281
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 90, 334
BmsI GCATC 2 cut(s) 22, 235
Bsa29I ATCGAT 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 55, 286
BseYI CCCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 181
BshVI ATCGAT 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 88, 332
BspACI CCGC 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 264
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 90, 334
BspPI GGATC 4 cut(s) 83, 96, 327, 340
BspQI GCTCTTC 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 88, 332
BssNAI GTATAC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 156, 336
BstF5I GGATG 2 cut(s) 55, 286
BstFNI CGCG 1 cut(s) 181
BstKTI GATC 2 cut(s) 91, 335
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 2 cut(s) 88, 332
BstUI CGCG 1 cut(s) 181
BstX2I RGATCY 2 cut(s) 88, 332
BstYI RGATCY 2 cut(s) 88, 332
BstZ17I GTATAC 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 264
BtsCI GGATG 2 cut(s) 55, 286
BtsIMutI CAGTG 2 cut(s) 71, 228
ClaI ATCGAT 1 cut(s) 264
CseI GACGC 1 cut(s) 187
CviAII CATG 1 cut(s) 118
DpnI GATC 2 cut(s) 90, 334
DpnII GATC 2 cut(s) 88, 332
Eam1104I CTCTTC 2 cut(s) 156, 336
EarI CTCTTC 2 cut(s) 156, 336
Eco130I CCWWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 121
FaiI YATR 7 cut(s) 8, 10, 68, 119, 138, 146, 209
FatI CATG 1 cut(s) 117
FblI GTMKAC 2 cut(s) 67, 257
FokI GGATG 2 cut(s) 42, 293
FspBI CTAG 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 39
HgaI GACGC 1 cut(s) 187
Hin1II CATG 1 cut(s) 121
HinfI GANTC 3 cut(s) 76, 189, 324
HphI GGTGA 3 cut(s) 152, 295, 326
Hpy166II GTNNAC 2 cut(s) 68, 258
Hpy188I TCNGA 2 cut(s) 177, 188
Hpy188III TCNNGA 4 cut(s) 80, 107, 155, 330
Hpy8I GTNNAC 2 cut(s) 68, 258
HpyAV CCTTC 2 cut(s) 311, 316
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 2 cut(s) 88, 332
LguI GCTCTTC 1 cut(s) 336
LpnPI CCDG 6 cut(s) 21, 65, 120, 181, 208, 315
LweI GCATC 2 cut(s) 22, 235
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 90, 334
MboI GATC 2 cut(s) 88, 332
MboII GAAGA 4 cut(s) 133, 143, 287, 296
MflI RGATCY 2 cut(s) 88, 332
MluCI AATT 3 cut(s) 41, 61, 125
MluI ACGCGT 1 cut(s) 179
MlyI GAGTC 3 cut(s) 70, 198, 333
MnlI CCTC 4 cut(s) 39, 159, 246, 262
MroXI GAANNNNTTC 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 116
MvnI CGCG 1 cut(s) 181
NdeII GATC 2 cut(s) 88, 332
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 2 cut(s) 90, 334
NmuCI GTSAC 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 125
PleI GAGTC 3 cut(s) 70, 197, 332
PpsI GAGTC 3 cut(s) 70, 197, 332
PspFI CCCAGC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 90, 334
PsuI RGATCY 2 cut(s) 88, 332
RseI CAYNNNNRTG 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 88, 332
SchI GAGTC 3 cut(s) 70, 198, 333
SetI ASST 3 cut(s) 208, 238, 308
SfaNI GCATC 2 cut(s) 22, 235
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 3 cut(s) 41, 61, 125
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 92
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 154, 264
TasI AATT 3 cut(s) 41, 61, 125
TscAI CASTG 2 cut(s) 78, 235
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 4 cut(s) 17, 134, 297, 298
TspRI CASTG 2 cut(s) 78, 235
XapI RAATTY 1 cut(s) 125
XmiI GTMKAC 2 cut(s) 67, 257
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.