Prupe.8G043900_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
4534548 .. 4537117
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G043900.1

Sequence Viewer

Length: 2034 bp
ATGTGGAGGAAGTCGCCGAGATTCTCCCAACGACGTCGTTCGACACTCTCTCTCCCAATCCAACCCCTACGAATCCGAGCCCTTTCGGGGGCTACTGCTGTTGGTCTCGCTTCTGGGGCCACCAAAGCTTCTTCGCACTGGGCTGGCCTCCGCCATGGTCGCTGCTATTGGGAGCTCTCCAAAGCTCGCCCAAGTTCCAGTGCATATGCATTTGCTACGGCTCATGAGCACGAGGAAGTTGAGGCTCAGCATGAGGCTAACAACTTAACTACGGGAAGGAACAGCACATCCGAGCCTAGTGGAACTTATAGTGGGTATTGTGGTCAAAATAATTTGCAGCTGCAACAGAAACTAAATGGGGCTTGTGCAGATGGTTCAAGGGACCCCCAGCAGAACTCAAATCAGTATAATCCGAGTTACAATGGGGTTTTTAAGAGAAGCACAAGCAATGATTTTCTGAACCATCCAGTTCAACAAAATGGAAATTTTAGTGGGCATAATGGGCAAGAAAATGGGGGGTTACTGCAGACCCCTGAATTGGATTGGAGATATTTAGAAAATGGAAAGGGATCCATAGAAATCAGACAGAATCCAGATGGTTTTGGTTCACAAGGCAATTCAGGGTTTCAGGGAAACCTGAATCAGAATTGTACGCAGAATGTTGCACAATATCAGCAAAATGTAAATGGTTATTACACAAGGAATGATGCAATGCATCAACAGAACCCTAGTTATGGACAGTATCAGCAGAACCCTAGTTGTCGACAATATCAACAGAACCCTAGTTATGGACAAAATCAGCAGAATCCTAGGGATGGAAAATATCAGCAAGGCTCTAGTTGTGGACAATATCAGCTAGGCCCTAGTCAATATCAGCAAAGCCCGCATGTTGTACAATCTCAAACAAATACAGATCCTTTTCAAAACAGGATAGTGGATTCTCAAGTAGCAAGTGAGTCTAAATCTCAAGGAAAACTGATTGAGGCTTCTGAAAGTAGCCCATACATTGGTACTCTTCAAAAGTTGGATAATTTTTGCAAGGAGGGCAAAGGTAAGGAGGCTATGGAGATCTTGGGTGTGCTAGAGAAGCAGCACGTTCATGTGGAATTGCATCTGTATTTAAAGTTAATGCAGGCATGCGGGGAGGCTAAAGCTCTAGAAGAAGCAAAACTTGTTCATGAAAACATTACAAGATTAGCGTCTCCTTTGGAAGCGTGCACGTACAACAGAATTTTAGAGATGTATTCTAAATGTGGTTCTATGGACAACACATTCATGGTTTTCAACAAGATGCCAAAGCCCAATTTGACATCTTGGAACACTATGATAACATGGCTTGCTAAAAATGGCCTTGGGGAAGATGCCATTGATATATTTAATGAGTTTAAGAAAGCAGGTCTGAAACCTGATTGCCAAATGTTTATTGGTGTTTTCCACGCTTGTAGTGTCTTGGAAGATACTACTGAAGGACTGCTGCACTTTGAATCAATGAGCAAAGATTATGGCATTGTCCCAACTATGGATCATTATGTCAGTGTAGTAGATATGCTAGGAAGTACGGGTTATCTGGACGAAGCTTTGGAGTTCATTGAAAAGATGCCATTGGAACCTAATGTCGATATTTGGAAAACCTTGATGAATCTCTGCAGAGTTCACGGGTACTTGGAGCTAGGGGATCGGTGTGCTGAGCTTATTGAGCAGCTAGATCCCTCCAGCTTAAATGAGGGTTTAAGGGAACAAATGAAGGAGGCTGGTTACATTCCAGAGACTAGATTCGTGTTACGTGACATAGATCAGGGAGGCAAGGAAGATGCTTTGCTTGCCCATAGTGAGAGACTTGCTGTAGCTTATGCCCTCCTCAGCAGCCCAGCTCGTTCATCTATTAGGGTAATCAAGAATCTTCGTGTTTGTGGTGATTGCCATAATGCGTTGAAGATTATTTCAAAAATTGTAGGCAGGGAACTCATCATGCGAGATGCTAAGAGATTCCACCATTTCAAAGATGGCTTGTGCTCTTGCCGAGATTATTGGTGA

Protein Analysis

678

Amino Acids

75.94

Weight (kDa)

6.5

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 1385
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 763
AciI CCGC 3 cut(s) 151, 884, 1140
AclWI GGATC 6 cut(s) 564, 577, 908, 1530, 1683, 1700
AcsI RAATTY 2 cut(s) 484, 1230
AcuI CTGAAG 1 cut(s) 1485
AcyI GRCGYC 1 cut(s) 34
AfaI GTAC 6 cut(s) 652, 894, 1012, 1223, 1558, 1661
AfiI CCNNNNNNNGG 8 cut(s) 87, 88, 538, 734, 788, 815, 1007, 1519
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
Alw21I GWGCWC 4 cut(s) 177, 231, 1220, 2015
Alw26I GTCTC 4 cut(s) 110, 1206, 1760, 1828
Alw44I GTGCAC 1 cut(s) 1216
AlwI GGATC 6 cut(s) 564, 577, 908, 1530, 1683, 1700
AoxI GGCC 4 cut(s) 117, 145, 859, 1348
ApaLI GTGCAC 1 cut(s) 1216
ApeKI GCWGC 7 cut(s) 162, 337, 340, 1090, 1474, 1699, 1863
ApoI RAATTY 2 cut(s) 484, 1230
AspA2I CCTAGG 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 117, 382, 860
AsuHPI GGTGA 1 cut(s) 1925
AvaII GGWCC 1 cut(s) 382
AvrII CCTAGG 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 1220
BamHI GGATCC 1 cut(s) 569
BanII GRGCYC 2 cut(s) 82, 177
BauI CACGAG 1 cut(s) 230
Bbv12I GWGCWC 4 cut(s) 177, 231, 1220, 2015
BbvCI CCTCAGC 1 cut(s) 1859
BbvI GCAGC 7 cut(s) 149, 327, 349, 1102, 1461, 1711, 1875
BccI CCATC 5 cut(s) 365, 471, 590, 809, 1997
BceAI ACGGC 1 cut(s) 234
BcoDI GTCTC 4 cut(s) 110, 1206, 1760, 1828
BfmI CTRYAG 3 cut(s) 524, 1645, 1842
BfuAI ACCTGC 1 cut(s) 1385
BglII AGATCT 1 cut(s) 1068
BisI GCNGC 7 cut(s) 163, 338, 341, 1091, 1475, 1700, 1864
BlnI CCTAGG 1 cut(s) 809
BlpI GCTNAGC 2 cut(s) 246, 1686
BlsI GCNGC 7 cut(s) 164, 339, 342, 1092, 1476, 1701, 1865
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 3 cut(s) 117, 382, 860
BmiI GGNNCC 5 cut(s) 118, 383, 384, 571, 1608
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 8 cut(s) 697, 724, 1120, 1281, 1351, 1587, 1801, 1966
BmuI ACTGGG 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 1696
Bpu10I CCTNAGC 1 cut(s) 1859
Bpu1102I GCTNAGC 2 cut(s) 246, 1686
BpuEI CTTGAG 2 cut(s) 927, 951
BsaAI YACGTR 2 cut(s) 1221, 1784
BsaHI GRCGYC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 3 cut(s) 154, 809, 1351
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 8 cut(s) 87, 88, 538, 734, 788, 815, 1007, 1519
Bse1I ACTGG 3 cut(s) 143, 198, 467
Bse3DI GCAATG 2 cut(s) 454, 717
BseDI CCNNGG 3 cut(s) 154, 809, 1351
BseGI GGATG 3 cut(s) 287, 463, 820
BseLI CCNNNNNNNGG 8 cut(s) 87, 88, 538, 734, 788, 815, 1007, 1519
BseMI GCAATG 2 cut(s) 454, 717
BseMII CTCAG 3 cut(s) 260, 1677, 1873
BseNI ACTGG 3 cut(s) 143, 198, 467
BseRI GAGGAG 1 cut(s) 1847
BseSI GKGCMC 1 cut(s) 1220
BseXI GCAGC 7 cut(s) 149, 327, 349, 1102, 1461, 1711, 1875
BseYI CCCAGC 2 cut(s) 387, 1867
BsgI GTGCAG 2 cut(s) 387, 1460
BshFI GGCC 4 cut(s) 119, 147, 861, 1350
BsiHKAI GWGCWC 4 cut(s) 177, 231, 1220, 2015
BslFI GGGAC 2 cut(s) 395, 1496
BslI CCNNNNNNNGG 8 cut(s) 87, 88, 538, 734, 788, 815, 1007, 1519
BsmAI GTCTC 4 cut(s) 110, 1206, 1760, 1828
BsmBI CGTCTC 1 cut(s) 1206
BsmFI GGGAC 2 cut(s) 395, 1496
BsnI GGCC 4 cut(s) 119, 147, 861, 1350
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 5 cut(s) 82, 177, 231, 1220, 2015
Bsp1407I TGTACA 1 cut(s) 892
Bsp143I GATC 7 cut(s) 569, 913, 1068, 1522, 1675, 1705, 1792
Bsp1720I GCTNAGC 2 cut(s) 246, 1686
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 3 cut(s) 151, 884, 1140
BspANI GGCC 4 cut(s) 119, 147, 861, 1350
BspCNI CTCAG 3 cut(s) 259, 1678, 1872
BspHI TCATGA 2 cut(s) 223, 1177
BspLI GGNNCC 5 cut(s) 118, 383, 384, 571, 1608
BspMAI CTGCAG 2 cut(s) 528, 1649
BspMI ACCTGC 1 cut(s) 1385
BspPI GGATC 6 cut(s) 564, 577, 908, 1530, 1683, 1700
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 454, 717
BsrGI TGTACA 1 cut(s) 892
BsrI ACTGG 3 cut(s) 143, 198, 467
BssECI CCNNGG 3 cut(s) 154, 809, 1351
BssMI GATC 7 cut(s) 569, 913, 1068, 1522, 1675, 1705, 1792
BssNI GRCGYC 1 cut(s) 34
BssSI CACGAG 1 cut(s) 230
BssT1I CCWWGG 3 cut(s) 154, 809, 1351
Bst2BI CACGAG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 741
Bst6I CTCTTC 1 cut(s) 1020
BstACI GRCGYC 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 892
BstBAI YACGTR 2 cut(s) 1221, 1784
BstC8I GCNNGC 8 cut(s) 145, 187, 884, 1134, 1138, 1216, 1338, 1821
BstDEI CTNAG 4 cut(s) 246, 1686, 1859, 1980
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 3 cut(s) 287, 463, 820
BstKTI GATC 7 cut(s) 572, 916, 1071, 1525, 1678, 1708, 1795
BstMAI GTCTC 4 cut(s) 110, 1206, 1760, 1828
BstMBI GATC 7 cut(s) 569, 913, 1068, 1522, 1675, 1705, 1792
BstMWI GCNNNNNNNGC 9 cut(s) 116, 125, 159, 502, 883, 1044, 1087, 1696, 1820
BstNSI RCATGY 2 cut(s) 890, 1140
BstSFI CTRYAG 3 cut(s) 524, 1645, 1842
BstSLI GKGCMC 1 cut(s) 1220
BstV1I GCAGC 7 cut(s) 149, 327, 349, 1102, 1461, 1711, 1875
BstX2I RGATCY 4 cut(s) 569, 913, 1068, 1705
BstYI RGATCY 4 cut(s) 569, 913, 1068, 1705
BsuRI GGCC 4 cut(s) 119, 147, 861, 1350
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 3 cut(s) 287, 463, 820
BtsIMutI CAGTG 3 cut(s) 136, 205, 1540
BveI ACCTGC 1 cut(s) 1385
Cac8I GCNNGC 8 cut(s) 145, 187, 884, 1134, 1138, 1216, 1338, 1821
CciI TCATGA 2 cut(s) 223, 1177
Cfr13I GGNCC 3 cut(s) 117, 382, 860
CseI GACGC 1 cut(s) 1188
Csp6I GTAC 6 cut(s) 651, 893, 1011, 1222, 1557, 1660
CviQI GTAC 6 cut(s) 651, 893, 1011, 1222, 1557, 1660
DdeI CTNAG 4 cut(s) 246, 1686, 1859, 1980
DpnI GATC 7 cut(s) 571, 915, 1070, 1524, 1677, 1707, 1794
DpnII GATC 7 cut(s) 569, 913, 1068, 1522, 1675, 1705, 1792
DraI TTTAAA 1 cut(s) 1122
Eam1104I CTCTTC 1 cut(s) 1020
EarI CTCTTC 1 cut(s) 1020
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 3 cut(s) 154, 809, 1351
Eco24I GRGCYC 2 cut(s) 82, 177
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 1485
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 2 cut(s) 382, 860
EcoT14I CCWWGG 3 cut(s) 154, 809, 1351
EcoT22I ATGCAT 2 cut(s) 211, 717
EcoT38I GRGCYC 2 cut(s) 82, 177
ErhI CCWWGG 3 cut(s) 154, 809, 1351
Esp3I CGTCTC 1 cut(s) 1206
FalI AAGNNNNNCTT 2 cut(s) 1155, 1187
FaqI GGGAC 2 cut(s) 395, 1496
FauI CCCGC 2 cut(s) 891, 1133
FauNDI CATATG 1 cut(s) 205
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 7 cut(s) 163, 338, 341, 1091, 1475, 1700, 1864
FokI GGATG 3 cut(s) 274, 450, 827
FriOI GRGCYC 2 cut(s) 82, 177
Fsp4HI GCNGC 7 cut(s) 163, 338, 341, 1091, 1475, 1700, 1864
GluI GCNGC 7 cut(s) 163, 338, 341, 1091, 1475, 1700, 1864
GsaI CCCAGC 2 cut(s) 391, 1871
GsuI CTGGAG 1 cut(s) 1696
HaeIII GGCC 4 cut(s) 119, 147, 861, 1350
HgaI GACGC 1 cut(s) 1188
Hin1I GRCGYC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 764
HindII GTYRAC 1 cut(s) 764
HindIII AAGCTT 2 cut(s) 126, 1575
HphI GGTGA 1 cut(s) 1925
Hpy166II GTNNAC 5 cut(s) 608, 764, 845, 1218, 1654
Hpy188I TCNGA 8 cut(s) 77, 292, 414, 459, 584, 645, 991, 1401
Hpy188III TCNNGA 7 cut(s) 224, 593, 1157, 1178, 1568, 1763, 1894
Hpy8I GTNNAC 5 cut(s) 608, 764, 845, 1218, 1654
Hpy99I CGWCG 2 cut(s) 36, 39
HpyAV CCTTC 3 cut(s) 270, 1460, 1738
HpyCH4III ACNGT 1 cut(s) 741
HpyCH4IV ACGT 4 cut(s) 34, 1095, 1220, 1783
HpyF10VI GCNNNNNNNGC 9 cut(s) 116, 125, 159, 502, 883, 1044, 1087, 1696, 1820
HpyF3I CTNAG 4 cut(s) 246, 1686, 1859, 1980
HpySE526I ACGT 4 cut(s) 34, 1095, 1220, 1783
Hsp92I GRCGYC 1 cut(s) 34
KflI GGGWCCC 1 cut(s) 382
Kzo9I GATC 7 cut(s) 569, 913, 1068, 1522, 1675, 1705, 1792
LmnI GCTCC 2 cut(s) 172, 1666
Lsp1109I GCAGC 7 cut(s) 149, 327, 349, 1102, 1461, 1711, 1875
LweI GCATC 8 cut(s) 697, 724, 1120, 1281, 1351, 1587, 1801, 1966
MaeII ACGT 4 cut(s) 34, 1095, 1220, 1783
MaeIII GTNAC 5 cut(s) 416, 519, 1754, 1779, 1784
MalI GATC 7 cut(s) 571, 915, 1070, 1524, 1677, 1707, 1794
MboI GATC 7 cut(s) 569, 913, 1068, 1522, 1675, 1705, 1792
MboII GAAGA 8 cut(s) 123, 1007, 1172, 1370, 1466, 1820, 1892, 1945
MflI RGATCY 4 cut(s) 569, 913, 1068, 1705
MhlI GDGCHC 5 cut(s) 82, 177, 231, 1220, 2015
MlyI GAGTC 1 cut(s) 965
MmeI TCCRAC 2 cut(s) 85, 1005
Mph1103I ATGCAT 2 cut(s) 211, 717
MseI TTAA 8 cut(s) 266, 432, 1121, 1127, 1377, 1386, 1718, 1730
MslI CAYNNNNRTG 2 cut(s) 1098, 1274
MspA1I CMGCKG 1 cut(s) 340
MwoI GCNNNNNNNGC 9 cut(s) 116, 125, 159, 502, 883, 1044, 1087, 1696, 1820
NcoI CCATGG 1 cut(s) 154
NdeI CATATG 1 cut(s) 205
NdeII GATC 7 cut(s) 569, 913, 1068, 1522, 1675, 1705, 1792
NlaIV GGNNCC 5 cut(s) 118, 383, 384, 571, 1608
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 1784
NsiI ATGCAT 2 cut(s) 211, 717
NspI RCATGY 2 cut(s) 890, 1140
PaeI GCATGC 1 cut(s) 1140
PagI TCATGA 2 cut(s) 223, 1177
PflMI CCANNNNNTGG 1 cut(s) 1007
PkrI GCNGC 7 cut(s) 164, 339, 342, 1092, 1476, 1701, 1865
PleI GAGTC 1 cut(s) 964
PpsI GAGTC 1 cut(s) 964
Ppu21I YACGTR 2 cut(s) 1221, 1784
PpuMI RGGWCCY 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 382
PspFI CCCAGC 2 cut(s) 387, 1867
PspN4I GGNNCC 5 cut(s) 118, 383, 384, 571, 1608
PspPI GGNCC 3 cut(s) 117, 382, 860
PspPPI RGGWCCY 1 cut(s) 382
PstI CTGCAG 2 cut(s) 528, 1649
PsuI RGATCY 4 cut(s) 569, 913, 1068, 1705
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 6 cut(s) 652, 894, 1012, 1223, 1558, 1661
RsaNI GTAC 6 cut(s) 651, 893, 1011, 1222, 1557, 1660
RseI CAYNNNNRTG 2 cut(s) 1098, 1274
SacI GAGCTC 1 cut(s) 177
SalI GTCGAC 1 cut(s) 762
SaqAI TTAA 8 cut(s) 266, 432, 1121, 1127, 1377, 1386, 1718, 1730
SatI GCNGC 7 cut(s) 163, 338, 341, 1091, 1475, 1700, 1864
Sau3AI GATC 7 cut(s) 569, 913, 1068, 1522, 1675, 1705, 1792
Sau96I GGNCC 3 cut(s) 117, 382, 860
SchI GAGTC 1 cut(s) 965
SduI GDGCHC 5 cut(s) 82, 177, 231, 1220, 2015
SfaNI GCATC 8 cut(s) 697, 724, 1120, 1281, 1351, 1587, 1801, 1966
SfcI CTRYAG 3 cut(s) 524, 1645, 1842
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 1098, 1274
SmlI CTYRAG 2 cut(s) 942, 966
SmoI CTYRAG 2 cut(s) 942, 966
SphI GCATGC 1 cut(s) 1140
SsiI CCGC 3 cut(s) 151, 884, 1140
SstI GAGCTC 1 cut(s) 177
StyI CCWWGG 3 cut(s) 154, 809, 1351
TaaI ACNGT 1 cut(s) 741
TaiI ACGT 4 cut(s) 37, 1098, 1223, 1786
TaqI TCGA 3 cut(s) 41, 763, 1617
TatI WGTACW 1 cut(s) 892
Tru1I TTAA 8 cut(s) 266, 432, 1121, 1127, 1377, 1386, 1718, 1730
Tru9I TTAA 8 cut(s) 266, 432, 1121, 1127, 1377, 1386, 1718, 1730
TscAI CASTG 3 cut(s) 143, 205, 1540
TseFI GTSAC 1 cut(s) 1784
TseI GCWGC 7 cut(s) 162, 337, 340, 1090, 1474, 1699, 1863
Tsp45I GTSAC 1 cut(s) 1784
TspDTI ATGAA 8 cut(s) 1088, 1166, 1194, 1264, 1576, 1652, 1757, 1866
TspRI CASTG 3 cut(s) 143, 205, 1540
Van91I CCANNNNNTGG 1 cut(s) 1007
VneI GTGCAC 1 cut(s) 1216
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 2 cut(s) 484, 1230
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 2 cut(s) 890, 1140
XcmI CCANNNNNNNNNTGG 2 cut(s) 1421, 2000
XmaJI CCTAGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 763
ZraI GACGTC 1 cut(s) 35
Zsp2I ATGCAT 2 cut(s) 211, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.