Prupe.8G108100_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0028972
Physical Location & Seq
Reverse (-)
13864656 .. 13865453
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G108100.1

Sequence Viewer

Length: 705 bp
ATGGGTGCTGCTGCTGATGCTTCTGCCGCCGAAGAAGACAAAACCCCTCAAGCTTGTCAGAAAATGTGTATGTGTATCCTCTTCTGCCTCTGCCTCACGATCCTTGTAGGTGTGATCTGGCTCTTCAACCTCACCGTCAGGCACATCCTCAGGGACATCGAAATCAACCGCGTGGACCCCACGTTCCGCCTCCACTCCGCCACCGTGTCCCTACTCAACAACGCGTCTGCCTCCGAGTTCACCGCCACTTGGGACGTGACGCTGGTCGCCTCCAACCCCAACCACAAGCTCGACATCTACTACGACACCCTCCAGGCCGCCATCTTCTACAACGCGAACCGGAGCGACAGCTATAGGCCCAGAGTCTTGCTGGCAACGAAGCCTCTGCAGCCGCCATCGGCTCTGAGAACCAGGGCCGAGACCACTTGTAGTTTCCGCATCGAAGCCGCGTCCGCGTACATAGGTGATGACATGGCCAAGGAAATCTCGGAAGGGAGAGCTCGTGGAATGGTGAGATTTGAGCTCACCCTGTTGGCTATGTATAAGTTTCCCAACTGGTATTGGACATATCCCAAATTGTTTGCGGCTTGGTGCAACCCCGTCGAGTTTGGATTTTCCCCGGATAATTGGATCGGGAGGGCTCAGTCAAGTGCATGCGAGGAGAATGGGGATCTAAGTCGTTTGGTATTACAAATTGCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

235

Amino Acids

26.32

Weight (kDa)

6.31

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028972)

Species Orthologous Gene IDs
prunus_persica Prupe.8G108100_v2.0.a1
pyrus_communis pycom12g10350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 171, 224, 335, 449, 455
AclWI GGATC 3 cut(s) 94, 638, 678
AcoI YGGCCR 1 cut(s) 474
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 249
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 1 cut(s) 127
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 312, 410
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 5 cut(s) 53, 289, 351, 500, 523
AluI AGCT 5 cut(s) 53, 289, 351, 500, 523
Alw21I GWGCWC 2 cut(s) 502, 525
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 3 cut(s) 94, 638, 678
AoxI GGCC 4 cut(s) 315, 356, 414, 474
ApeKI GCWGC 3 cut(s) 8, 11, 388
AspS9I GGNCC 3 cut(s) 175, 357, 414
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 5 cut(s) 124, 232, 476, 517, 523
AvaII GGWCC 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 149
BalI TGGCCA 1 cut(s) 476
BanII GRGCYC 3 cut(s) 502, 525, 643
BauI CACGAG 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 502, 525
BbvI GCAGC 1 cut(s) 400
BccI CCATC 2 cut(s) 329, 403
BcgI CGANNNNNNTGC 4 cut(s) 367, 401, 583, 617
BciT130I CCWGG 2 cut(s) 314, 412
BciVI GTATCC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 1 cut(s) 413
BfmI CTRYAG 2 cut(s) 352, 386
BfuI GTATCC 1 cut(s) 86
BisI GCNGC 8 cut(s) 9, 12, 27, 318, 389, 392, 447, 585
BlsI GCNGC 8 cut(s) 10, 13, 28, 319, 390, 393, 448, 586
Bme1390I CCNGG 3 cut(s) 314, 412, 620
Bme18I GGWCC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 175, 357, 414
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 3 cut(s) 314, 412, 620
BmsI GCATC 2 cut(s) 7, 447
BoxI GACNNNNGTC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 620
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 411, 477, 618
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 560
Bse21I CCTNAGG 1 cut(s) 149
BseBI CCWGG 2 cut(s) 314, 412
BseDI CCNNGG 3 cut(s) 411, 477, 618
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 163, 395, 656
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 1 cut(s) 400
Bsh1236I CGCG 5 cut(s) 171, 224, 335, 449, 455
BshFI GGCC 4 cut(s) 317, 358, 416, 476
BsiHKAI GWGCWC 2 cut(s) 502, 525
BsiSI CCGG 2 cut(s) 340, 620
BslFI GGGAC 3 cut(s) 167, 193, 266
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 3 cut(s) 167, 193, 266
BsnI GGCC 4 cut(s) 317, 358, 416, 476
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 3 cut(s) 502, 525, 643
Bsp143I GATC 4 cut(s) 99, 114, 630, 670
BspANI GGCC 4 cut(s) 317, 358, 416, 476
BspCNI CTCAG 3 cut(s) 162, 396, 655
BspFNI CGCG 5 cut(s) 171, 224, 335, 449, 455
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 390
BspPI GGATC 3 cut(s) 94, 638, 678
BspQI GCTCTTC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 413
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 411, 477, 618
BssMI GATC 4 cut(s) 99, 114, 630, 670
BssSI CACGAG 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 477
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 314, 412
Bst4CI ACNGT 2 cut(s) 136, 205
Bst6I CTCTTC 2 cut(s) 86, 128
BstC8I GCNNGC 2 cut(s) 372, 655
BstDEI CTNAG 4 cut(s) 149, 404, 642, 674
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 5 cut(s) 171, 224, 335, 449, 455
BstKTI GATC 4 cut(s) 102, 117, 633, 673
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 4 cut(s) 99, 114, 630, 670
BstMWI GCNNNNNNNGC 4 cut(s) 17, 26, 388, 452
BstNI CCWGG 2 cut(s) 314, 412
BstNSI RCATGY 1 cut(s) 657
BstPAI GACNNNNGTC 1 cut(s) 263
BstSCI CCNGG 3 cut(s) 312, 410, 618
BstSFI CTRYAG 2 cut(s) 352, 386
BstUI CGCG 5 cut(s) 171, 224, 335, 449, 455
BstV1I GCAGC 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
Bsu36I CCTNAGG 1 cut(s) 149
BsuI GTATCC 1 cut(s) 86
BsuRI GGCC 4 cut(s) 317, 358, 416, 476
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 372, 655
Cfr13I GGNCC 3 cut(s) 175, 357, 414
CseI GACGC 3 cut(s) 213, 268, 438
Csp6I GTAC 1 cut(s) 457
CviAII CATG 2 cut(s) 472, 654
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 4 cut(s) 149, 404, 642, 674
DpnI GATC 4 cut(s) 101, 116, 632, 672
DpnII GATC 4 cut(s) 99, 114, 630, 670
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 2 cut(s) 86, 128
EarI CTCTTC 2 cut(s) 86, 128
EciI GGCGGA 2 cut(s) 176, 187
Ecl136II GAGCTC 2 cut(s) 500, 523
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 3 cut(s) 502, 525, 643
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 2 cut(s) 500, 523
Eco81I CCTNAGG 1 cut(s) 149
EcoICRI GAGCTC 2 cut(s) 500, 523
EcoRII CCWGG 2 cut(s) 312, 410
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 3 cut(s) 502, 525, 643
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 2 cut(s) 475, 657
FaiI YATR 8 cut(s) 71, 354, 461, 473, 539, 543, 568, 655
FaqI GGGAC 3 cut(s) 167, 193, 266
FatI CATG 2 cut(s) 471, 653
Fnu4HI GCNGC 8 cut(s) 9, 12, 27, 318, 389, 392, 447, 585
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 3 cut(s) 502, 525, 643
Fsp4HI GCNGC 8 cut(s) 9, 12, 27, 318, 389, 392, 447, 585
GluI GCNGC 8 cut(s) 9, 12, 27, 318, 389, 392, 447, 585
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 4 cut(s) 317, 358, 416, 476
HapII CCGG 2 cut(s) 340, 620
HgaI GACGC 3 cut(s) 213, 268, 438
Hin1II CATG 2 cut(s) 475, 657
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 1 cut(s) 363
HpaII CCGG 2 cut(s) 340, 620
HphI GGTGA 5 cut(s) 124, 232, 476, 517, 523
Hpy166II GTNNAC 2 cut(s) 175, 240
Hpy188I TCNGA 4 cut(s) 60, 235, 405, 490
Hpy188III TCNNGA 2 cut(s) 97, 634
Hpy8I GTNNAC 2 cut(s) 175, 240
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 2 cut(s) 136, 205
HpyCH4IV ACGT 2 cut(s) 182, 255
HpyCH4V TGCA 4 cut(s) 388, 594, 653, 698
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 26, 388, 452
HpyF3I CTNAG 4 cut(s) 149, 404, 642, 674
HpySE526I ACGT 2 cut(s) 182, 255
Hsp92II CATG 2 cut(s) 475, 657
Kzo9I GATC 4 cut(s) 99, 114, 630, 670
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 2 cut(s) 7, 447
MaeII ACGT 2 cut(s) 182, 255
MaeIII GTNAC 1 cut(s) 256
MalI GATC 4 cut(s) 101, 116, 632, 672
MboI GATC 4 cut(s) 99, 114, 630, 670
MboII GAAGA 5 cut(s) 44, 47, 73, 115, 316
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 3 cut(s) 502, 525, 643
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 3 cut(s) 575, 625, 693
MluI ACGCGT 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 297
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 476
MspI CCGG 2 cut(s) 340, 620
MspR9I CCNGG 3 cut(s) 314, 412, 620
MvaI CCWGG 2 cut(s) 314, 412
MvnI CGCG 5 cut(s) 171, 224, 335, 449, 455
MwoI GCNNNNNNNGC 4 cut(s) 17, 26, 388, 452
NciI CCSGG 1 cut(s) 620
NdeII GATC 4 cut(s) 99, 114, 630, 670
NlaIII CATG 2 cut(s) 475, 657
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 657
PaeI GCATGC 1 cut(s) 657
PciSI GCTCTTC 1 cut(s) 128
PkrI GCNGC 8 cut(s) 10, 13, 28, 319, 390, 393, 448, 586
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PshAI GACNNNNGTC 1 cut(s) 263
Psp124BI GAGCTC 2 cut(s) 502, 525
Psp6I CCWGG 2 cut(s) 312, 410
PspGI CCWGG 2 cut(s) 312, 410
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 3 cut(s) 175, 357, 414
PstI CTGCAG 1 cut(s) 390
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 2 cut(s) 502, 525
SapI GCTCTTC 1 cut(s) 128
SatI GCNGC 8 cut(s) 9, 12, 27, 318, 389, 392, 447, 585
Sau3AI GATC 4 cut(s) 99, 114, 630, 670
Sau96I GGNCC 3 cut(s) 175, 357, 414
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 3 cut(s) 314, 412, 620
SduI GDGCHC 3 cut(s) 502, 525, 643
SfaNI GCATC 2 cut(s) 7, 447
SfcI CTRYAG 2 cut(s) 352, 386
SinI GGWCC 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SphI GCATGC 1 cut(s) 657
Sse9I AATT 3 cut(s) 575, 625, 693
SstI GAGCTC 2 cut(s) 502, 525
StyD4I CCNGG 3 cut(s) 312, 410, 618
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 136, 205
TaiI ACGT 2 cut(s) 185, 258
TaqI TCGA 4 cut(s) 159, 291, 441, 603
TasI AATT 3 cut(s) 575, 625, 693
TauI GCSGC 5 cut(s) 29, 320, 394, 449, 587
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 3 cut(s) 8, 11, 388
Tsp45I GTSAC 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 657
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.