pycom12g10350

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0028972
Physical Location & Seq
Forward (+)
12299526 .. 12300206
681 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g10350.1

Sequence Viewer

Length: 681 bp
ATGGCTACACGAGTGAAAAATTACACTCTTTGTTCTCGCCTCAAACAGTGCCCAAAAGTTCACATCATAGCTATCATCGTCTGCATCCCTATCTACGTGCTGGGAATCCTGTTTTTCCACGACCAATATAAGTTGACTCCCGTAGAGCCCTGTTTATGGCTCGACTCTTCCACCGTGAGCAAACTCAACTCGAGTGGCTCCGAGTTAACCGCCACGTGGGACATGACTGTCGTCTCGGAGAACCCTAATCGCGTGCTTGCCATCTCCTTCGACAGCCTGCAAGTCACCATCTCGTACAAAACGGACACCGACGACAACGGCAGAGACGTCTTGCTCACAACGAAGCCGGTGCCGCCTCCTCCTTCGCCTTTAAATACAGAAACCTCGACCGCTCACAGCTTCAAGATCGAAACGGTGTCCGCTTATGTAGGCGATTACGTGGCCAATCAAATCTCCGAAGGGAGAGCTCGTGGATCGGTGAAATTCGTGTTCGGCATGCTAGGTTATTATAGGTACGTCAATACTTCGCGGTGGTATTTGACTAGGCGTAGGTTAGAGTTTGGGGTGTTCTGTTACTGGGTCGAGTTCGGGTTTTCACCGGGTAATTGGACCGGGACATTGACAACGATGGATGAGTCGAGGGCATGCGTGGATGATCCGATAAGAGTCCATTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

227

Amino Acids

25.58

Weight (kDa)

8.17

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028972)

Species Orthologous Gene IDs
prunus_persica Prupe.8G108100_v2.0.a1
pyrus_communis pycom12g10350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AatII GACGTC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 392
AccII CGCG 2 cut(s) 252, 529
AciI CCGC 5 cut(s) 210, 353, 390, 420, 529
AclWI GGATC 2 cut(s) 481, 650
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 482
AcvI CACGTG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 296, 515
AfiI CCNNNNNNNGG 2 cut(s) 156, 216
AgsI TTSAA 2 cut(s) 403, 676
AluBI AGCT 3 cut(s) 71, 399, 467
AluI AGCT 3 cut(s) 71, 399, 467
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 2 cut(s) 238, 318
AlwI GGATC 2 cut(s) 481, 650
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 1 cut(s) 441
ApoI RAATTY 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 609
AsuC2I CCSGG 2 cut(s) 600, 613
AsuHPI GGTGA 3 cut(s) 277, 490, 588
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 53
BalI TGGCCA 1 cut(s) 443
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 2 cut(s) 150, 469
BauI CACGAG 2 cut(s) 9, 468
BbrPI CACGTG 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 469
BccI CCATC 3 cut(s) 269, 296, 622
BceAI ACGGC 1 cut(s) 334
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BcnI CCSGG 2 cut(s) 600, 613
BcoDI GTCTC 2 cut(s) 238, 318
BfaI CTAG 2 cut(s) 500, 543
BisI GCNGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 354
Bme1390I CCNGG 2 cut(s) 600, 613
Bme18I GGWCC 1 cut(s) 609
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 2 cut(s) 199, 351
BmrFI CCNGG 2 cut(s) 600, 613
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 586
BoxI GACNNNNGTC 1 cut(s) 230
BpuMI CCSGG 2 cut(s) 600, 613
BsaAI YACGTR 3 cut(s) 97, 216, 439
BsaHI GRCGYC 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 216
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 581
BseGI GGATG 3 cut(s) 84, 637, 658
BseLI CCNNNNNNNGG 2 cut(s) 156, 216
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 100
Bsh1236I CGCG 2 cut(s) 252, 529
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 443
BshNI GGYRCC 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 3 cut(s) 347, 599, 612
BslFI GGGAC 2 cut(s) 233, 628
BslI CCNNNNNNNGG 2 cut(s) 156, 216
BsmAI GTCTC 2 cut(s) 238, 318
BsmBI CGTCTC 2 cut(s) 238, 318
BsmFI GGGAC 2 cut(s) 233, 628
BsnI GGCC 1 cut(s) 443
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 53, 150, 469
Bsp143I GATC 3 cut(s) 405, 473, 655
BspACI CCGC 5 cut(s) 210, 353, 390, 420, 529
BspANI GGCC 1 cut(s) 443
BspFNI CGCG 2 cut(s) 252, 529
BspLI GGNNCC 2 cut(s) 199, 351
BspPI GGATC 2 cut(s) 481, 650
BspT107I GGYRCC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 346
BssMI GATC 3 cut(s) 405, 473, 655
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 2 cut(s) 9, 468
Bst2BI CACGAG 2 cut(s) 9, 468
Bst4CI ACNGT 4 cut(s) 48, 175, 229, 415
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 327
BstBAI YACGTR 3 cut(s) 97, 216, 439
BstC8I GCNNGC 5 cut(s) 254, 258, 278, 497, 646
BstF5I GGATG 3 cut(s) 84, 637, 658
BstFNI CGCG 2 cut(s) 252, 529
BstKTI GATC 3 cut(s) 408, 476, 658
BstMAI GTCTC 2 cut(s) 238, 318
BstMBI GATC 3 cut(s) 405, 473, 655
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstNSI RCATGY 2 cut(s) 499, 648
BstPAI GACNNNNGTC 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 598, 611
BstSLI GKGCMC 1 cut(s) 53
BstUI CGCG 2 cut(s) 252, 529
BsuRI GGCC 1 cut(s) 443
BtsCI GGATG 3 cut(s) 84, 637, 658
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 5 cut(s) 254, 258, 278, 497, 646
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 609
Csp6I GTAC 2 cut(s) 295, 514
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 3 cut(s) 223, 496, 645
CviQI GTAC 2 cut(s) 295, 514
DpnI GATC 3 cut(s) 407, 475, 657
DpnII GATC 3 cut(s) 405, 473, 655
DraI TTTAAA 1 cut(s) 372
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 467
Eco24I GRGCYC 2 cut(s) 150, 469
Eco47I GGWCC 1 cut(s) 609
Eco53kI GAGCTC 1 cut(s) 467
Eco72I CACGTG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 467
EcoT38I GRGCYC 2 cut(s) 150, 469
Esp3I CGTCTC 2 cut(s) 238, 318
FaeI CATG 3 cut(s) 226, 499, 648
FaiI YATR 8 cut(s) 68, 129, 157, 224, 426, 497, 510, 646
FaqI GGGAC 2 cut(s) 233, 628
FatI CATG 3 cut(s) 222, 495, 644
Fnu4HI GCNGC 1 cut(s) 353
FokI GGATG 3 cut(s) 71, 644, 665
FriOI GRGCYC 2 cut(s) 150, 469
Fsp4HI GCNGC 1 cut(s) 353
FspBI CTAG 2 cut(s) 500, 543
GluI GCNGC 1 cut(s) 353
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 443
HapII CCGG 3 cut(s) 347, 599, 612
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 3 cut(s) 226, 499, 648
HincII GTYRAC 2 cut(s) 135, 207
HindII GTYRAC 2 cut(s) 135, 207
HinfI GANTC 5 cut(s) 105, 136, 164, 635, 666
HpaI GTTAAC 1 cut(s) 207
HpaII CCGG 3 cut(s) 347, 599, 612
HphI GGTGA 3 cut(s) 277, 490, 588
Hpy166II GTNNAC 3 cut(s) 61, 135, 207
Hpy188I TCNGA 4 cut(s) 202, 238, 457, 660
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 3 cut(s) 61, 135, 207
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 277, 372, 452
HpyCH4III ACNGT 4 cut(s) 48, 175, 229, 415
HpyCH4IV ACGT 5 cut(s) 96, 215, 327, 438, 516
HpyCH4V TGCA 2 cut(s) 84, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpySE526I ACGT 5 cut(s) 96, 215, 327, 438, 516
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 3 cut(s) 226, 499, 648
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 405, 473, 655
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 8 cut(s) 86, 122, 163, 290, 360, 562, 612, 625
LweI GCATC 1 cut(s) 93
MaeI CTAG 2 cut(s) 500, 543
MaeII ACGT 5 cut(s) 96, 215, 327, 438, 516
MaeIII GTNAC 2 cut(s) 283, 572
MalI GATC 3 cut(s) 407, 475, 657
MbiI CCGCTC 1 cut(s) 392
MboI GATC 3 cut(s) 405, 473, 655
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 3 cut(s) 53, 150, 469
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 3 cut(s) 19, 482, 604
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 4 cut(s) 130, 158, 644, 675
MnlI CCTC 5 cut(s) 50, 366, 369, 394, 633
Mox20I TGGCCA 1 cut(s) 443
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 206, 371
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 3 cut(s) 347, 599, 612
MspR9I CCNGG 2 cut(s) 600, 613
MvnI CGCG 2 cut(s) 252, 529
MwoI GCNNNNNNNGC 1 cut(s) 352
NciI CCSGG 2 cut(s) 600, 613
NdeII GATC 3 cut(s) 405, 473, 655
NlaIII CATG 3 cut(s) 226, 499, 648
NlaIV GGNNCC 2 cut(s) 199, 351
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 2 cut(s) 499, 648
PaeI GCATGC 2 cut(s) 499, 648
PaeR7I CTCGAG 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 354
PleI GAGTC 4 cut(s) 130, 158, 643, 674
PmaCI CACGTG 1 cut(s) 216
PmlI CACGTG 1 cut(s) 216
PpsI GAGTC 4 cut(s) 130, 158, 643, 674
Ppu21I YACGTR 3 cut(s) 97, 216, 439
PshAI GACNNNNGTC 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 469
PspCI CACGTG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 199, 351
PspPI GGNCC 1 cut(s) 609
PspXI VCTCGAGB 1 cut(s) 190
RsaI GTAC 2 cut(s) 296, 515
RsaNI GTAC 2 cut(s) 295, 514
SacI GAGCTC 1 cut(s) 469
SaqAI TTAA 2 cut(s) 206, 371
SatI GCNGC 1 cut(s) 353
Sau3AI GATC 3 cut(s) 405, 473, 655
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 4 cut(s) 130, 158, 644, 675
ScrFI CCNGG 2 cut(s) 600, 613
SduI GDGCHC 3 cut(s) 53, 150, 469
SfaNI GCATC 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 190
SinI GGWCC 1 cut(s) 609
SlaI CTCGAG 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SphI GCATGC 2 cut(s) 499, 648
Sse9I AATT 3 cut(s) 19, 482, 604
SsiI CCGC 5 cut(s) 210, 353, 390, 420, 529
SspMI CTAG 2 cut(s) 500, 543
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 598, 611
TaaI ACNGT 4 cut(s) 48, 175, 229, 415
TaiI ACGT 5 cut(s) 99, 218, 330, 441, 519
TaqI TCGA 7 cut(s) 162, 191, 270, 386, 408, 582, 638
TasI AATT 3 cut(s) 19, 482, 604
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 2 cut(s) 206, 371
Tru9I TTAA 2 cut(s) 206, 371
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 609
XapI RAATTY 1 cut(s) 482
XceI RCATGY 2 cut(s) 499, 648
XhoI CTCGAG 1 cut(s) 190
XspI CTAG 2 cut(s) 500, 543
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.