ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD10G1310000.v1.1 |
| pyrus_communis | pycom01g00460 pycom05g09370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 356, 1389, 2256, 2429 |
| Acc16I | TGCGCA | 1 cut(s) | 982 |
| Acc36I | ACCTGC | 2 cut(s) | 1842, 2291 |
| AccB1I | GGYRCC | 1 cut(s) | 1697 |
| AccI | GTMKAC | 1 cut(s) | 824 |
| AciI | CCGC | 2 cut(s) | 752, 2326 |
| AclWI | GGATC | 1 cut(s) | 2561 |
| AcuI | CTGAAG | 2 cut(s) | 746, 1301 |
| AfaI | GTAC | 4 cut(s) | 349, 422, 1491, 2305 |
| AfeI | AGCGCT | 1 cut(s) | 456 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1406, 1579, 2193 |
| AjiI | CACGTC | 2 cut(s) | 1130, 1597 |
| AjnI | CCWGG | 3 cut(s) | 616, 1789, 2408 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1059, 1091, 2135, 2167 |
| AluBI | AGCT | 9 cut(s) | 360, 417, 672, 731, 1013, 1094, 1136, 1689, 2161 |
| AluI | AGCT | 9 cut(s) | 360, 417, 672, 731, 1013, 1094, 1136, 1689, 2161 |
| Alw26I | GTCTC | 3 cut(s) | 221, 241, 2534 |
| AlwI | GGATC | 1 cut(s) | 2561 |
| Ama87I | CYCGRG | 1 cut(s) | 1343 |
| Aor51HI | AGCGCT | 1 cut(s) | 456 |
| AoxI | GGCC | 3 cut(s) | 51, 755, 1078 |
| ApeKI | GCWGC | 1 cut(s) | 1686 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 806, 838 |
| AseI | ATTAAT | 1 cut(s) | 279 |
| AspLEI | GCGC | 3 cut(s) | 457, 983, 2284 |
| AspS9I | GGNCC | 4 cut(s) | 755, 1055, 1740, 1769 |
| AsuC2I | CCSGG | 1 cut(s) | 1018 |
| AsuHPI | GGTGA | 6 cut(s) | 628, 827, 1181, 1258, 1319, 2345 |
| AvaI | CYCGRG | 1 cut(s) | 1343 |
| AvaII | GGWCC | 3 cut(s) | 1055, 1740, 1769 |
| AxyI | CCTNAGG | 1 cut(s) | 1331 |
| BaeGI | GKGCMC | 1 cut(s) | 1702 |
| BanI | GGYRCC | 1 cut(s) | 1697 |
| BbsI | GAAGAC | 1 cut(s) | 1214 |
| BbvI | GCAGC | 1 cut(s) | 1698 |
| BccI | CCATC | 6 cut(s) | 119, 647, 893, 1243, 2468, 2618 |
| BceAI | ACGGC | 1 cut(s) | 1125 |
| BciT130I | CCWGG | 3 cut(s) | 618, 1791, 2410 |
| BciVI | GTATCC | 1 cut(s) | 1797 |
| BclI | TGATCA | 1 cut(s) | 2335 |
| BcnI | CCSGG | 1 cut(s) | 1018 |
| BcoDI | GTCTC | 3 cut(s) | 221, 241, 2534 |
| BfaI | CTAG | 8 cut(s) | 11, 32, 41, 458, 1377, 1682, 1950, 2001 |
| BfmI | CTRYAG | 1 cut(s) | 343 |
| BfoI | RGCGCY | 1 cut(s) | 458 |
| BfuAI | ACCTGC | 2 cut(s) | 1842, 2291 |
| BfuI | GTATCC | 1 cut(s) | 1797 |
| BisI | GCNGC | 1 cut(s) | 1687 |
| BlsI | GCNGC | 1 cut(s) | 1688 |
| BmcAI | AGTACT | 1 cut(s) | 349 |
| Bme1390I | CCNGG | 4 cut(s) | 618, 1018, 1791, 2410 |
| Bme18I | GGWCC | 3 cut(s) | 1055, 1740, 1769 |
| BmeT110I | CYCGRG | 1 cut(s) | 1343 |
| BmgBI | CACGTC | 2 cut(s) | 1130, 1597 |
| BmgT120I | GGNCC | 4 cut(s) | 755, 1055, 1740, 1769 |
| BmiI | GGNNCC | 3 cut(s) | 16, 756, 1699 |
| BmrFI | CCNGG | 4 cut(s) | 618, 1018, 1791, 2410 |
| BmrI | ACTGGG | 1 cut(s) | 2493 |
| BmsI | GCATC | 1 cut(s) | 1621 |
| BmuI | ACTGGG | 1 cut(s) | 2493 |
| BoxI | GACNNNNGTC | 1 cut(s) | 233 |
| BpiI | GAAGAC | 1 cut(s) | 1214 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1499, 2639 |
| BpuEI | CTTGAG | 1 cut(s) | 2183 |
| BpuMI | CCSGG | 1 cut(s) | 1018 |
| BsaI | GGTCTC | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 2 cut(s) | 1342, 2329 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1406, 1579, 2193 |
| Bse1I | ACTGG | 1 cut(s) | 2488 |
| Bse21I | CCTNAGG | 1 cut(s) | 1331 |
| Bse3DI | GCAATG | 1 cut(s) | 101 |
| BseBI | CCWGG | 3 cut(s) | 618, 1791, 2410 |
| BseDI | CCNNGG | 2 cut(s) | 1342, 2329 |
| BseGI | GGATG | 5 cut(s) | 130, 639, 885, 1293, 1612 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1406, 1579, 2193 |
| BseMI | GCAATG | 1 cut(s) | 101 |
| BseMII | CTCAG | 2 cut(s) | 1568, 2508 |
| BseNI | ACTGG | 1 cut(s) | 2488 |
| BseRI | GAGGAG | 1 cut(s) | 7 |
| BseSI | GKGCMC | 1 cut(s) | 1702 |
| BseXI | GCAGC | 1 cut(s) | 1698 |
| BshFI | GGCC | 3 cut(s) | 53, 757, 1080 |
| BshNI | GGYRCC | 1 cut(s) | 1697 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1343 |
| BsiSI | CCGG | 1 cut(s) | 1018 |
| BslFI | GGGAC | 2 cut(s) | 917, 1882 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1406, 1579, 2193 |
| BsmAI | GTCTC | 3 cut(s) | 221, 241, 2534 |
| BsmFI | GGGAC | 2 cut(s) | 917, 1882 |
| BsmI | GAATGC | 1 cut(s) | 772 |
| BsnI | GGCC | 3 cut(s) | 53, 757, 1080 |
| Bso31I | GGTCTC | 1 cut(s) | 221 |
| BsoBI | CYCGRG | 1 cut(s) | 1343 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1702 |
| Bsp143I | GATC | 2 cut(s) | 2335, 2566 |
| Bsp19I | CCATGG | 1 cut(s) | 2329 |
| BspACI | CCGC | 2 cut(s) | 752, 2326 |
| BspANI | GGCC | 3 cut(s) | 53, 757, 1080 |
| BspCNI | CTCAG | 2 cut(s) | 1569, 2507 |
| BspHI | TCATGA | 1 cut(s) | 2317 |
| BspLI | GGNNCC | 3 cut(s) | 16, 756, 1699 |
| BspMI | ACCTGC | 2 cut(s) | 1842, 2291 |
| BspPI | GGATC | 1 cut(s) | 2561 |
| BspT107I | GGYRCC | 1 cut(s) | 1697 |
| BspTNI | GGTCTC | 1 cut(s) | 221 |
| BsrDI | GCAATG | 1 cut(s) | 101 |
| BsrI | ACTGG | 1 cut(s) | 2488 |
| BssECI | CCNNGG | 2 cut(s) | 1342, 2329 |
| BssMI | GATC | 2 cut(s) | 2335, 2566 |
| BssT1I | CCWWGG | 1 cut(s) | 2329 |
| Bst2UI | CCWGG | 3 cut(s) | 618, 1791, 2410 |
| Bst4CI | ACNGT | 4 cut(s) | 365, 1033, 1220, 1714 |
| Bst6I | CTCTTC | 2 cut(s) | 654, 1153 |
| BstC8I | GCNNGC | 2 cut(s) | 670, 979 |
| BstDEI | CTNAG | 5 cut(s) | 1331, 1499, 1577, 2494, 2639 |
| BstDSI | CCRYGG | 1 cut(s) | 2329 |
| BstF5I | GGATG | 5 cut(s) | 130, 639, 885, 1293, 1612 |
| BstH2I | RGCGCY | 1 cut(s) | 458 |
| BstHHI | GCGC | 3 cut(s) | 457, 983, 2284 |
| BstKTI | GATC | 2 cut(s) | 2338, 2569 |
| BstMAI | GTCTC | 3 cut(s) | 221, 241, 2534 |
| BstMBI | GATC | 2 cut(s) | 2335, 2566 |
| BstNI | CCWGG | 3 cut(s) | 618, 1791, 2410 |
| BstNSI | RCATGY | 2 cut(s) | 774, 2605 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 233 |
| BstSCI | CCNGG | 4 cut(s) | 616, 1016, 1789, 2408 |
| BstSFI | CTRYAG | 1 cut(s) | 343 |
| BstSLI | GKGCMC | 1 cut(s) | 1702 |
| BstV1I | GCAGC | 1 cut(s) | 1698 |
| BstV2I | GAAGAC | 1 cut(s) | 1214 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1331 |
| BsuI | GTATCC | 1 cut(s) | 1797 |
| BsuRI | GGCC | 3 cut(s) | 53, 757, 1080 |
| BtgI | CCRYGG | 1 cut(s) | 2329 |
| BtrI | CACGTC | 2 cut(s) | 1130, 1597 |
| BtsCI | GGATG | 5 cut(s) | 130, 639, 885, 1293, 1612 |
| BveI | ACCTGC | 2 cut(s) | 1842, 2291 |
| Cac8I | GCNNGC | 2 cut(s) | 670, 979 |
| CciI | TCATGA | 1 cut(s) | 2317 |
| CfoI | GCGC | 3 cut(s) | 457, 983, 2284 |
| Cfr13I | GGNCC | 4 cut(s) | 755, 1055, 1740, 1769 |
| Csp6I | GTAC | 4 cut(s) | 348, 421, 1490, 2304 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 195, 230 |
| CviQI | GTAC | 4 cut(s) | 348, 421, 1490, 2304 |
| DdeI | CTNAG | 5 cut(s) | 1331, 1499, 1577, 2494, 2639 |
| DpnI | GATC | 2 cut(s) | 2337, 2568 |
| DpnII | GATC | 2 cut(s) | 2335, 2566 |
| DraI | TTTAAA | 2 cut(s) | 519, 570 |
| Eam1104I | CTCTTC | 2 cut(s) | 654, 1153 |
| EarI | CTCTTC | 2 cut(s) | 654, 1153 |
| Eco130I | CCWWGG | 1 cut(s) | 2329 |
| Eco31I | GGTCTC | 1 cut(s) | 221 |
| Eco47I | GGWCC | 3 cut(s) | 1055, 1740, 1769 |
| Eco47III | AGCGCT | 1 cut(s) | 456 |
| Eco57I | CTGAAG | 2 cut(s) | 746, 1301 |
| Eco81I | CCTNAGG | 1 cut(s) | 1331 |
| Eco88I | CYCGRG | 1 cut(s) | 1343 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1740, 1769 |
| EcoRI | GAATTC | 2 cut(s) | 448, 2489 |
| EcoRII | CCWGG | 3 cut(s) | 616, 1789, 2408 |
| EcoT14I | CCWWGG | 1 cut(s) | 2329 |
| EcoT22I | ATGCAT | 2 cut(s) | 772, 2382 |
| ErhI | CCWWGG | 1 cut(s) | 2329 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 41, 73, 1059, 1091, 1429, 1461 |
| FaqI | GGGAC | 2 cut(s) | 917, 1882 |
| FauI | CCCGC | 1 cut(s) | 745 |
| FauNDI | CATATG | 1 cut(s) | 2242 |
| FbaI | TGATCA | 1 cut(s) | 2335 |
| FblI | GTMKAC | 1 cut(s) | 824 |
| Fnu4HI | GCNGC | 1 cut(s) | 1687 |
| FokI | GGATG | 5 cut(s) | 137, 626, 872, 1300, 1599 |
| Fsp4HI | GCNGC | 1 cut(s) | 1687 |
| FspBI | CTAG | 8 cut(s) | 11, 32, 41, 458, 1377, 1682, 1950, 2001 |
| FspI | TGCGCA | 1 cut(s) | 982 |
| GlaI | GCGC | 3 cut(s) | 456, 982, 2283 |
| GluI | GCNGC | 1 cut(s) | 1687 |
| HaeII | RGCGCY | 1 cut(s) | 458 |
| HaeIII | GGCC | 3 cut(s) | 53, 757, 1080 |
| HapII | CCGG | 1 cut(s) | 1018 |
| HhaI | GCGC | 3 cut(s) | 457, 983, 2284 |
| Hin6I | GCGC | 3 cut(s) | 455, 981, 2282 |
| HinP1I | GCGC | 3 cut(s) | 455, 981, 2282 |
| HincII | GTYRAC | 1 cut(s) | 776 |
| HindII | GTYRAC | 1 cut(s) | 776 |
| HindIII | AAGCTT | 3 cut(s) | 670, 1134, 2159 |
| HinfI | GANTC | 6 cut(s) | 529, 633, 1426, 1645, 2405, 2523 |
| HpaII | CCGG | 1 cut(s) | 1018 |
| HphI | GGTGA | 6 cut(s) | 628, 827, 1181, 1258, 1319, 2345 |
| Hpy166II | GTNNAC | 3 cut(s) | 776, 825, 1055 |
| Hpy188I | TCNGA | 8 cut(s) | 173, 287, 542, 765, 846, 1353, 1676, 2566 |
| Hpy188III | TCNNGA | 7 cut(s) | 439, 1085, 1727, 1950, 2001, 2318, 2575 |
| Hpy8I | GTNNAC | 3 cut(s) | 776, 825, 1055 |
| HpyCH4III | ACNGT | 4 cut(s) | 365, 1033, 1220, 1714 |
| HpyCH4IV | ACGT | 3 cut(s) | 1129, 1176, 1596 |
| HpyF3I | CTNAG | 5 cut(s) | 1331, 1499, 1577, 2494, 2639 |
| HpySE526I | ACGT | 3 cut(s) | 1129, 1176, 1596 |
| HspAI | GCGC | 3 cut(s) | 455, 981, 2282 |
| Ksp22I | TGATCA | 1 cut(s) | 2335 |
| Kzo9I | GATC | 2 cut(s) | 2335, 2566 |
| LmnI | GCTCC | 2 cut(s) | 20, 785 |
| Lsp1109I | GCAGC | 1 cut(s) | 1698 |
| LweI | GCATC | 1 cut(s) | 1621 |
| MaeI | CTAG | 8 cut(s) | 11, 32, 41, 458, 1377, 1682, 1950, 2001 |
| MaeII | ACGT | 3 cut(s) | 1129, 1176, 1596 |
| MaeIII | GTNAC | 3 cut(s) | 365, 496, 1172 |
| MalI | GATC | 2 cut(s) | 2337, 2568 |
| MboI | GATC | 2 cut(s) | 2335, 2566 |
| MboII | GAAGA | 9 cut(s) | 641, 1140, 1214, 1307, 1330, 1442, 1640, 1654, 2633 |
| MfeI | CAATTG | 2 cut(s) | 489, 2178 |
| MhlI | GDGCHC | 1 cut(s) | 1702 |
| MlyI | GAGTC | 1 cut(s) | 1420 |
| MmeI | TCCRAC | 4 cut(s) | 196, 282, 842, 1265 |
| Mph1103I | ATGCAT | 2 cut(s) | 772, 2382 |
| MseI | TTAA | 7 cut(s) | 279, 518, 536, 569, 867, 1821, 1886 |
| MslI | CAYNNNNRTG | 4 cut(s) | 972, 1068, 1637, 2245 |
| MspI | CCGG | 1 cut(s) | 1018 |
| MspR9I | CCNGG | 4 cut(s) | 618, 1018, 1791, 2410 |
| MunI | CAATTG | 2 cut(s) | 489, 2178 |
| Mva1269I | GAATGC | 1 cut(s) | 772 |
| MvaI | CCWGG | 3 cut(s) | 618, 1791, 2410 |
| NciI | CCSGG | 1 cut(s) | 1018 |
| NcoI | CCATGG | 1 cut(s) | 2329 |
| NdeI | CATATG | 1 cut(s) | 2242 |
| NdeII | GATC | 2 cut(s) | 2335, 2566 |
| NlaIV | GGNNCC | 3 cut(s) | 16, 756, 1699 |
| NmuCI | GTSAC | 1 cut(s) | 1172 |
| NsbI | TGCGCA | 1 cut(s) | 982 |
| NsiI | ATGCAT | 2 cut(s) | 772, 2382 |
| NspI | RCATGY | 2 cut(s) | 774, 2605 |
| PagI | TCATGA | 1 cut(s) | 2317 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1173 |
| PctI | GAATGC | 1 cut(s) | 772 |
| PfeI | GAWTC | 5 cut(s) | 529, 633, 1645, 2405, 2523 |
| PfoI | TCCNGGA | 1 cut(s) | 1016 |
| PkrI | GCNGC | 1 cut(s) | 1688 |
| PleI | GAGTC | 1 cut(s) | 1420 |
| PpsI | GAGTC | 1 cut(s) | 1420 |
| PpuMI | RGGWCCY | 2 cut(s) | 1740, 1769 |
| PshAI | GACNNNNGTC | 1 cut(s) | 233 |
| PshBI | ATTAAT | 1 cut(s) | 279 |
| PsiI | TTATAA | 4 cut(s) | 356, 1389, 2256, 2429 |
| Psp5II | RGGWCCY | 2 cut(s) | 1740, 1769 |
| Psp6I | CCWGG | 3 cut(s) | 616, 1789, 2408 |
| PspGI | CCWGG | 3 cut(s) | 616, 1789, 2408 |
| PspN4I | GGNNCC | 3 cut(s) | 16, 756, 1699 |
| PspPI | GGNCC | 4 cut(s) | 755, 1055, 1740, 1769 |
| PspPPI | RGGWCCY | 2 cut(s) | 1740, 1769 |
| RsaI | GTAC | 4 cut(s) | 349, 422, 1491, 2305 |
| RsaNI | GTAC | 4 cut(s) | 348, 421, 1490, 2304 |
| RseI | CAYNNNNRTG | 4 cut(s) | 972, 1068, 1637, 2245 |
| SaqAI | TTAA | 7 cut(s) | 279, 518, 536, 569, 867, 1821, 1886 |
| SatI | GCNGC | 1 cut(s) | 1687 |
| Sau3AI | GATC | 2 cut(s) | 2335, 2566 |
| Sau96I | GGNCC | 4 cut(s) | 755, 1055, 1740, 1769 |
| ScaI | AGTACT | 1 cut(s) | 349 |
| SchI | GAGTC | 1 cut(s) | 1420 |
| ScrFI | CCNGG | 4 cut(s) | 618, 1018, 1791, 2410 |
| SduI | GDGCHC | 1 cut(s) | 1702 |
| SfaNI | GCATC | 1 cut(s) | 1621 |
| SfcI | CTRYAG | 1 cut(s) | 343 |
| SinI | GGWCC | 3 cut(s) | 1055, 1740, 1769 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 972, 1068, 1637, 2245 |
| SmlI | CTYRAG | 1 cut(s) | 2162 |
| SmoI | CTYRAG | 1 cut(s) | 2162 |
| SsiI | CCGC | 2 cut(s) | 752, 2326 |
| SspMI | CTAG | 8 cut(s) | 11, 32, 41, 458, 1377, 1682, 1950, 2001 |
| StyD4I | CCNGG | 4 cut(s) | 616, 1016, 1789, 2408 |
| StyI | CCWWGG | 1 cut(s) | 2329 |
| TaaI | ACNGT | 4 cut(s) | 365, 1033, 1220, 1714 |
| TaiI | ACGT | 3 cut(s) | 1132, 1179, 1599 |
| TaqI | TCGA | 2 cut(s) | 582, 2612 |
| TatI | WGTACW | 2 cut(s) | 347, 1489 |
| TfiI | GAWTC | 5 cut(s) | 529, 633, 1645, 2405, 2523 |
| Tru1I | TTAA | 7 cut(s) | 279, 518, 536, 569, 867, 1821, 1886 |
| Tru9I | TTAA | 7 cut(s) | 279, 518, 536, 569, 867, 1821, 1886 |
| TseFI | GTSAC | 1 cut(s) | 1172 |
| TseI | GCWGC | 1 cut(s) | 1686 |
| Tsp45I | GTSAC | 1 cut(s) | 1172 |
| VpaK11BI | GGWCC | 3 cut(s) | 1055, 1740, 1769 |
| VspI | ATTAAT | 1 cut(s) | 279 |
| XbaI | TCTAGA | 2 cut(s) | 1949, 2000 |
| XceI | RCATGY | 2 cut(s) | 774, 2605 |
| XmiI | GTMKAC | 1 cut(s) | 824 |
| XspI | CTAG | 8 cut(s) | 11, 32, 41, 458, 1377, 1682, 1950, 2001 |
| ZrmI | AGTACT | 1 cut(s) | 349 |
| Zsp2I | ATGCAT | 2 cut(s) | 772, 2382 |