Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0029189

Physical Location & Seq

Genomic Coordinates Forward (+)

3753602 .. 3755789

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATTCTTGCAAATACAACATCTATTGGCATGCAACCAAAAGTTGATGAGACACCCATTTCTAAGCATGCTCTGGGATCGATCTCGTTGGTTTTTGATGCCGTCTACACCCCCAAAATGACCAGACTCTTGAAAGAAGCAAAAGAGGCCGGGGCCACAGTTGTTAGTGGGTTGGAGATGTTCATTGGACAGGCATATGAACAGTTTGAGAGGTTCACTGGGTTGCCTGCCCCAAAGGAACTCTTTCGAAAAGTAATGGACGGTAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

91

Amino Acids

9.85

Weight (kDa)

6.56

Isoelectric Point (pI)

15.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029189)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g04690
rosa_samantha	Rh2AG271800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	2 cut(s)	147, 153
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	149, 155
BshVI	ATCGAT	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	149, 155
Bsp119I	TTCGAA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	77, 81
BspANI	GGCC	2 cut(s)	149, 155
BspDI	ATCGAT	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	77, 81
Bst4CI	ACNGT	3 cut(s)	160, 204, 263
BstBI	TTCGAA	1 cut(s)	247
BstC8I	GCNNGC	3 cut(s)	32, 69, 228
BstDEI	CTNAG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	80, 84
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	77, 81
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	2 cut(s)	34, 71
BstSCI	CCNGG	1 cut(s)	149
Bsu15I	ATCGAT	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	149, 155
BsuTUI	ATCGAT	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	32, 69, 228
Cfr13I	GGNCC	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	80
CviAII	CATG	2 cut(s)	31, 68
CviJI	RGCY	3 cut(s)	149, 155, 267
CviKI_1	RGCY	3 cut(s)	149, 155, 267
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	79, 83
DpnII	GATC	2 cut(s)	77, 81
FaeI	CATG	2 cut(s)	34, 71
FaiI	YATR	4 cut(s)	32, 69, 196, 198
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	2 cut(s)	30, 67
FauNDI	CATATG	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	149, 155
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	2 cut(s)	34, 71
HinfI	GANTC	2 cut(s)	4, 126
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	106, 216
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	106, 216
HpyCH4III	ACNGT	3 cut(s)	160, 204, 263
HpyCH4V	TGCA	2 cut(s)	11, 34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	34, 71
Kzo9I	GATC	2 cut(s)	77, 81
LpnPI	CCDG	6 cut(s)	59, 136, 163, 176, 204, 240
LweI	GCATC	1 cut(s)	88
MalI	GATC	2 cut(s)	79, 83
MboI	GATC	2 cut(s)	77, 81
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	139, 204
MroXI	GAANNNNTTC	1 cut(s)	243
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	77, 81
NlaIII	CATG	2 cut(s)	34, 71
NlaIV	GGNNCC	1 cut(s)	154
NspI	RCATGY	2 cut(s)	34, 71
NspV	TTCGAA	1 cut(s)	247
PaeI	GCATGC	2 cut(s)	34, 71
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	77, 81
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	2 cut(s)	215, 269
SfaNI	GCATC	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	247
SphI	GCATGC	2 cut(s)	34, 71
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	3 cut(s)	160, 204, 263
TaqI	TCGA	2 cut(s)	80, 247
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	172, 213
TspRI	CASTG	1 cut(s)	223
XceI	RCATGY	2 cut(s)	34, 71
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.