Rh2AG271800

Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0029189
Physical Location & Seq
Forward (+)
32374973 .. 32375442
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG271800.1

Sequence Viewer

Length: 345 bp
ATGCTTAATTATTTTCTTCAAGATCCAGCCAGAGAAATTGCAGACACAATTGGAGGACAGGCTTTGTCTATTTCTGATCTAGATAAATTCCACCCAGAGGATGGCATGATTCTTGCAAACACAACATCTATTGGAATGCAGCCCAAAGTTAATGAGACACCCATTTCTAAGCATGCTCTGAAATCTTACGCCTTGGTGTTTGATGCTGTTTACACCCCCAAAATAACCAGACTCTTGAAGGAAGCAGAAGAGTCTGGTGCCATAGTTGTTAGTGGGTTGGAGATGTTCATTGGACAGGCATATGAACAGTTCGAGAGGTTCACTGGATTGCCTGGTAAGATTTAG

Protein Analysis

114

Amino Acids

12.55

Weight (kDa)

4.9

Isoelectric Point (pI)

22.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDH_C PF18317 92 - 111 2.1e-07 Shikimate 5'-dehydrogenase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029189)

Species Orthologous Gene IDs
pyrus_communis pycom01g04690
rosa_samantha Rh2AG271800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 101
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 97, 101
AgsI TTSAA 2 cut(s) 20, 238
AjnI CCWGG 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 86
BanI GGYRCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 101
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 97, 101
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 97, 101
BsmAI GTCTC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 22, 76
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 22, 76
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 2 cut(s) 25, 79
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 22, 76
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 174
CviAII CATG 2 cut(s) 106, 173
CviJI RGCY 3 cut(s) 29, 62, 142
CviKI_1 RGCY 3 cut(s) 29, 62, 142
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 24, 78
DpnII GATC 2 cut(s) 22, 76
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 109, 176
FaiI YATR 5 cut(s) 107, 174, 263, 301, 303
FatI CATG 2 cut(s) 105, 172
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 80
GluI GCNGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 109, 176
HinfI GANTC 3 cut(s) 109, 231, 251
Hpy166II GTNNAC 2 cut(s) 211, 321
Hpy188I TCNGA 2 cut(s) 76, 180
Hpy188III TCNNGA 4 cut(s) 20, 80, 235, 313
Hpy8I GTNNAC 2 cut(s) 211, 321
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 41, 116, 139
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 2 cut(s) 109, 176
Kzo9I GATC 2 cut(s) 22, 76
LpnPI CCDG 9 cut(s) 39, 43, 44, 108, 240, 241, 281, 309, 318
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 80
MalI GATC 2 cut(s) 24, 78
MboI GATC 2 cut(s) 22, 76
MboII GAAGA 2 cut(s) 8, 260
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 1 cut(s) 22
MluCI AATT 4 cut(s) 7, 36, 48, 86
MlyI GAGTC 2 cut(s) 225, 260
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 3 cut(s) 47, 91, 309
MseI TTAA 2 cut(s) 6, 150
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 1 cut(s) 333
NdeI CATATG 1 cut(s) 301
NdeII GATC 2 cut(s) 22, 76
NlaIII CATG 2 cut(s) 109, 176
NlaIV GGNNCC 1 cut(s) 259
NspI RCATGY 1 cut(s) 176
PaeI GCATGC 1 cut(s) 176
PctI GAATGC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 101
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 2 cut(s) 225, 259
PpsI GAGTC 2 cut(s) 225, 259
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 22
SaqAI TTAA 2 cut(s) 6, 150
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 22, 76
SchI GAGTC 2 cut(s) 225, 260
ScrFI CCNGG 1 cut(s) 333
SetI ASST 1 cut(s) 320
SfaNI GCATC 1 cut(s) 193
SphI GCATGC 1 cut(s) 176
Sse9I AATT 4 cut(s) 7, 36, 48, 86
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 312
TasI AATT 4 cut(s) 7, 36, 48, 86
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 2 cut(s) 6, 150
Tru9I TTAA 2 cut(s) 6, 150
TscAI CASTG 1 cut(s) 328
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 277, 318
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.