pycom01g06170

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0027870
Physical Location & Seq
Forward (+)
6270913 .. 6271152
240 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06170.1

Sequence Viewer

Length: 240 bp
ATGGAGAAGCAATTGGCCTCCCTTACCTCCGTCACGTTCGACACAGACCTCTACGGCAGCACCGATAAAGGCGCATACGTCTCATCGATCCCTGTGAATGATGATGATGACAACACGGAGGCCATGGACAATGAAATTACTAGGAGGATGGCAATGTCGTACACAGCCCCCAAGTCGGAGCTGAACAAGAGGCCGAGAGGCGATGACGCTGATGAGGATTTGGGGTTCAAGAAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SF3b1

Protein Analysis

80

Amino Acids

8.8

Weight (kDa)

4.34

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027870)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00110
pyrus_communis pycom01g06170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 82
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 229
AloI GAACNNNNNNTCC 1 cut(s) 209
AluBI AGCT 2 cut(s) 181, 235
AluI AGCT 2 cut(s) 181, 235
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 82
AoxI GGCC 3 cut(s) 15, 120, 191
ApeKI GCWGC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 3 cut(s) 17, 122, 193
BshVI ATCGAT 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 85
BsmBI CGTCTC 1 cut(s) 85
BsnI GGCC 3 cut(s) 17, 122, 193
Bsp143I GATC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 3 cut(s) 17, 122, 193
BspDI ATCGAT 1 cut(s) 86
BspPI GGATC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 86
BsuRI GGCC 3 cut(s) 17, 122, 193
BsuTUI ATCGAT 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 153
CfoI GCGC 1 cut(s) 74
ClaI ATCGAT 1 cut(s) 86
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 124
CviJI RGCY 6 cut(s) 17, 122, 167, 181, 193, 235
CviKI_1 RGCY 6 cut(s) 17, 122, 167, 181, 193, 235
CviQI GTAC 1 cut(s) 160
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 1 cut(s) 127
FaiI YATR 2 cut(s) 76, 125
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 58
HaeIII GGCC 3 cut(s) 17, 122, 193
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 162
HpyCH4IV ACGT 2 cut(s) 35, 78
HpySE526I ACGT 2 cut(s) 35, 78
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 69
MaeI CTAG 1 cut(s) 141
MaeII ACGT 2 cut(s) 35, 78
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MfeI CAATTG 1 cut(s) 11
MluCI AATT 2 cut(s) 11, 135
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 8 cut(s) 28, 37, 59, 112, 138, 183, 191, 208
MunI CAATTG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PkrI GCNGC 1 cut(s) 59
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 87
SetI ASST 6 cut(s) 29, 38, 51, 81, 183, 237
SfcI CTRYAG 1 cut(s) 236
SgeI CNNG 8 cut(s) 46, 104, 127, 136, 153, 184, 199, 207
Sse9I AATT 2 cut(s) 11, 135
SspMI CTAG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 2 cut(s) 38, 81
TaqI TCGA 2 cut(s) 39, 86
TasI AATT 2 cut(s) 11, 135
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 2 cut(s) 19, 131
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.