Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0020427

Physical Location & Seq

Genomic Coordinates Forward (+)

9187255 .. 9189085

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATAACAAACTCATCTTGGTTGCGAAACTTATAGAAGGGATTGGAAAGTTGGTGCCAGTTGAAAAGTTGTGCTGTTTGGGGGCTGTGATTCTTCAACCCATTTTCGTTCCAGAGAATCCAAGCGAAAGCAAAAGCATCACGATTAACTCAAAAGCCGAAAGGCCGGTGAGGAGGACGGCCATGGTGGCCATTGTCAATGCTCCCTATTTCCTTTTGACTGCTGATTACGGCTCCGAGCCCAACGCTCTCGACCCTTGGACTGATGTTGAAACGATGGTTTCTCCAACAATTTTTGCCCACCATAGTTTGTCTTATCTCATGAGTGACAAGCCTCAGGAAGCTCTCAACAATGCAATGCAAGCACAAGTAGCTTCCCAGTCTAGCACTTTGTATCTTATCTTTAGGCTGCTGCCCTTTCGGCCCCTTGGAATGGACAGTGAAGCTCAAGCAGCACTTGTTATGAACTCTGCGTGGGAATGTATCCTTCTTAGGATATGTAAACACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

171

Amino Acids

18.78

Weight (kDa)

6.29

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	88 - 128	8.9e-12	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020427)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g08230 pycom01g08320 pycom01g08410 pycom01g08580 pycom01g08640 pycom01g08700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AcoI	YGGCCR	2 cut(s)	180, 189
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	65, 98, 272
AluBI	AGCT	3 cut(s)	344, 374, 446
AluI	AGCT	3 cut(s)	344, 374, 446
AoxI	GGCC	4 cut(s)	164, 180, 189, 422
ApeKI	GCWGC	3 cut(s)	409, 412, 452
AspS9I	GGNCC	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	396, 399, 464
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	2 cut(s)	195, 247
BciVI	GTATCC	1 cut(s)	494
BfaI	CTAG	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	494
BglI	GCCNNNNNGGC	2 cut(s)	188, 421
BisI	GCNGC	3 cut(s)	410, 413, 453
BlsI	GCNGC	3 cut(s)	411, 414, 454
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	3 cut(s)	57, 235, 425
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	183, 257, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	2 cut(s)	59, 379
Bse21I	CCTNAGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	183, 257, 427
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	2 cut(s)	59, 379
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	396, 399, 464
BshFI	GGCC	4 cut(s)	166, 182, 191, 424
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	433
BsnI	GGCC	4 cut(s)	166, 182, 191, 424
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	4 cut(s)	166, 182, 191, 424
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	57, 235, 425
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	59, 379
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	183, 257, 427
BssT1I	CCWWGG	3 cut(s)	183, 257, 427
Bst4CI	ACNGT	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	336, 491
BstDSI	CCRYGG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 362, 371, 421, 452
BstV1I	GCAGC	3 cut(s)	396, 399, 464
Bsu36I	CCTNAGG	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	4 cut(s)	166, 182, 191, 424
BtgI	CCRYGG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	363
CciI	TCATGA	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	423
CviAII	CATG	2 cut(s)	184, 322
DdeI	CTNAG	2 cut(s)	336, 491
EaeI	YGGCCR	2 cut(s)	180, 189
Eco130I	CCWWGG	3 cut(s)	183, 257, 427
Eco24I	GRGCYC	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	336
EcoT14I	CCWWGG	3 cut(s)	183, 257, 427
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	3 cut(s)	183, 257, 427
FaeI	CATG	2 cut(s)	187, 325
FaiI	YATR	6 cut(s)	35, 185, 306, 323, 464, 499
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	2 cut(s)	183, 321
Fnu4HI	GCNGC	3 cut(s)	410, 413, 453
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	410, 413, 453
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	3 cut(s)	410, 413, 453
HaeIII	GGCC	4 cut(s)	166, 182, 191, 424
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	2 cut(s)	187, 325
HinfI	GANTC	2 cut(s)	91, 118
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	5 cut(s)	113, 142, 251, 322, 338
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	32, 497
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	2 cut(s)	356, 361
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 362, 371, 421, 452
HpyF3I	CTNAG	2 cut(s)	336, 491
Hsp92II	CATG	2 cut(s)	187, 325
LmnI	GCTCC	2 cut(s)	208, 239
LpnPI	CCDG	5 cut(s)	72, 126, 180, 323, 392
Lsp1109I	GCAGC	3 cut(s)	396, 399, 464
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	326
MboII	GAAGA	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	1 cut(s)	291
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	165, 168, 345
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	191
MspI	CCGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	5 cut(s)	188, 362, 371, 421, 452
NcoI	CCATGG	1 cut(s)	183
NlaIII	CATG	2 cut(s)	187, 325
NlaIV	GGNNCC	3 cut(s)	57, 235, 425
NmuCI	GTSAC	1 cut(s)	326
PagI	TCATGA	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	91, 118
PkrI	GCNGC	3 cut(s)	411, 414, 454
PspN4I	GGNNCC	3 cut(s)	57, 235, 425
PspPI	GGNCC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	410, 413, 453
Sau96I	GGNCC	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	3 cut(s)	346, 376, 448
SfaNI	GCATC	1 cut(s)	147
SfiI	GGCCNNNNNGGCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	384
StyI	CCWWGG	3 cut(s)	183, 257, 427
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	91, 118
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	409, 412, 452
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	445
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.