pycom01g08410

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
9337754 .. 9339108
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g08410.2

Sequence Viewer

Length: 399 bp
ATGGAAAAAACCCCATTTTGCTTCCAATTCCATCTTCAGCTTTCTTCCCCTCCCAATAATGAAAAGCCCTCACTTTCTCTAAAGAGTAATGGGAAACTAAATTTTAAGATAAAATTTCCCATTTTCGTTCCAGAGAATCCAAGCGAAAGCAAAAGCATCACGATTAACTCAAAAGCCGAAAGGCCGGTGAGGAGGACGGCCATGGTGGCCACTGTCAATGCTACCTATTTCCTTTTGACTGCTGATTACGGCTCCGAGCCCAACGCTCTCGACCCTTGGACTGATGTTGAAACGATGGTTTCTCCAACAATTTTTGCCCACCATAGTTTGTCTTATCTCATGAGTGACAAGCCTCAGGAAGCTCTCAACAATGCAATGCAAGCACAAGTAGTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.75

Weight (kDa)

6.83

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020427)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 198, 207
AcsI RAATTY 2 cut(s) 100, 113
AcuI CTGAAG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 290
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 2 cut(s) 40, 362
AluI AGCT 2 cut(s) 40, 362
AoxI GGCC 3 cut(s) 182, 198, 207
ApoI RAATTY 2 cut(s) 100, 113
AsuHPI GGTGA 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 354
BalI TGGCCA 1 cut(s) 209
BanII GRGCYC 1 cut(s) 261
BccI CCATC 2 cut(s) 39, 289
BceAI ACGGC 2 cut(s) 213, 265
BfaI CTAG 1 cut(s) 397
BglI GCCNNNNNGGC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 253
BmsI GCATC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 201, 275
Bse118I RCCGGY 1 cut(s) 184
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 201, 275
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 205
BshFI GGCC 3 cut(s) 184, 200, 209
BsiSI CCGG 1 cut(s) 185
BsnI GGCC 3 cut(s) 184, 200, 209
Bsp1286I GDGCHC 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 201
BspANI GGCC 3 cut(s) 184, 200, 209
BspCNI CTCAG 1 cut(s) 367
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 201, 275
BssT1I CCWWGG 2 cut(s) 201, 275
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 206, 380
Bsu36I CCTNAGG 1 cut(s) 354
BsuRI GGCC 3 cut(s) 184, 200, 209
BtgI CCRYGG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 381
CciI TCATGA 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 184
CviAII CATG 2 cut(s) 202, 340
DdeI CTNAG 1 cut(s) 354
EaeI YGGCCR 2 cut(s) 198, 207
Eco130I CCWWGG 2 cut(s) 201, 275
Eco24I GRGCYC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 201, 275
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 201, 275
FaeI CATG 2 cut(s) 205, 343
FaiI YATR 3 cut(s) 203, 324, 341
FatI CATG 2 cut(s) 201, 339
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 1 cut(s) 397
HaeIII GGCC 3 cut(s) 184, 200, 209
HapII CCGG 1 cut(s) 185
Hin1II CATG 2 cut(s) 205, 343
HinfI GANTC 1 cut(s) 136
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 5 cut(s) 131, 160, 269, 340, 356
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 374, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 380
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 2 cut(s) 205, 343
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 3 cut(s) 144, 198, 341
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 344
MboII GAAGA 2 cut(s) 26, 36
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 4 cut(s) 26, 100, 113, 309
MluNI TGGCCA 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 5 cut(s) 60, 79, 183, 186, 363
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MseI TTAA 2 cut(s) 105, 165
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 206, 380
NcoI CCATGG 1 cut(s) 201
NlaIII CATG 2 cut(s) 205, 343
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 344
PagI TCATGA 1 cut(s) 339
PfeI GAWTC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 105, 165
SduI GDGCHC 1 cut(s) 261
SetI ASST 3 cut(s) 42, 227, 364
SfaNI GCATC 1 cut(s) 165
SfiI GGCCNNNNNGGCC 1 cut(s) 206
Sse9I AATT 4 cut(s) 26, 100, 113, 309
SspMI CTAG 1 cut(s) 397
StyI CCWWGG 2 cut(s) 201, 275
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 270
TasI AATT 4 cut(s) 26, 100, 113, 309
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 105, 165
Tru9I TTAA 2 cut(s) 105, 165
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 217
XapI RAATTY 2 cut(s) 100, 113
XspI CTAG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.