Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0020427

Physical Location & Seq

Genomic Coordinates Forward (+)

9637841 .. 9639652

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGATAACAAACTCATCTTGGTTGTGAAACTTATAGAAGGGATTGGAAAGTTGGTGCCAGTCGAAAAGTTGTGCTGTTTGGGGGCTGTGATTCTTCAAGTAGGGGCTAATAATCAATTTCTGCGCATAATATCGTTAAAAAAAAAAATAAAAAAAAAAAAGAAAAAGCCCATTTTCGTTCCAGAGAATCCAAGCGAAAGCGAAAGCATCACGATTAACTCAAAAGCCGAAAGGTCGGTGAGGAGGACGGCCATGGTGGCCAATGTCAATGCTCCCTATTTCCTTTTGACTGCTAATTACGGCACCGAGCCCAACGCTCTCGACCCTTGGACTGATGTTGAAACGATGGTTTCTCCAACAATTTTTGCCCACCATAGTTTGTCTTATCTCATGAGTGACAAGCCTCAGGAAGCTCTCAACAATGCAATGCAAGCACAAGTAGGTTCCCAGTCTAGCACTTTGTATCTTATCTTTAGGCTGCTGCCCTTTCGGCCCCTTGGAATGGACAGTGAAGCTCAAGCAGCACTTGTTATGAACTCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

182

Amino Acids

19.97

Weight (kDa)

9.37

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020427)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g08230 pycom01g08320 pycom01g08410 pycom01g08580 pycom01g08640 pycom01g08700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	125
AccB1I	GGYRCC	2 cut(s)	55, 302
AcoI	YGGCCR	2 cut(s)	249, 258
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	2 cut(s)	98, 341
AluBI	AGCT	2 cut(s)	413, 515
AluI	AGCT	2 cut(s)	413, 515
AoxI	GGCC	3 cut(s)	249, 258, 491
ApeKI	GCWGC	3 cut(s)	478, 481, 521
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	55, 302
BanII	GRGCYC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	465, 468, 533
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	2 cut(s)	264, 316
BfaI	CTAG	1 cut(s)	453
BglI	GCCNNNNNGGC	2 cut(s)	257, 490
BisI	GCNGC	3 cut(s)	479, 482, 522
BlsI	GCNGC	3 cut(s)	480, 483, 523
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	4 cut(s)	57, 304, 445, 494
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	252, 326, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	59, 448
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	252, 326, 496
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	59, 448
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	3 cut(s)	465, 468, 533
BshFI	GGCC	3 cut(s)	251, 260, 493
BshNI	GGYRCC	2 cut(s)	55, 302
BslI	CCNNNNNNNGG	1 cut(s)	502
BsnI	GGCC	3 cut(s)	251, 260, 493
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	3 cut(s)	251, 260, 493
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	4 cut(s)	57, 304, 445, 494
BspT107I	GGYRCC	2 cut(s)	55, 302
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	59, 448
BssECI	CCNNGG	3 cut(s)	252, 326, 496
BssT1I	CCWWGG	3 cut(s)	252, 326, 496
Bst4CI	ACNGT	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 431, 490, 521
BstV1I	GCAGC	3 cut(s)	465, 468, 533
Bsu36I	CCTNAGG	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	251, 260, 493
BtgI	CCRYGG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	432
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	492
CviAII	CATG	2 cut(s)	253, 391
DdeI	CTNAG	1 cut(s)	405
EaeI	YGGCCR	2 cut(s)	249, 258
Eco130I	CCWWGG	3 cut(s)	252, 326, 496
Eco24I	GRGCYC	1 cut(s)	312
Eco81I	CCTNAGG	1 cut(s)	405
EcoT14I	CCWWGG	3 cut(s)	252, 326, 496
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	3 cut(s)	252, 326, 496
FaeI	CATG	2 cut(s)	256, 394
FaiI	YATR	6 cut(s)	35, 128, 254, 375, 392, 533
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	2 cut(s)	252, 390
Fnu4HI	GCNGC	3 cut(s)	479, 482, 522
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	3 cut(s)	479, 482, 522
FspBI	CTAG	1 cut(s)	453
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	3 cut(s)	479, 482, 522
HaeIII	GGCC	3 cut(s)	251, 260, 493
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	256, 394
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	91, 187
HphI	GGTGA	1 cut(s)	250
Hpy188III	TCNNGA	5 cut(s)	182, 211, 320, 391, 407
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	2 cut(s)	425, 430
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 431, 490, 521
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	256, 394
HspAI	GCGC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	72, 195, 392, 461
Lsp1109I	GCAGC	3 cut(s)	465, 468, 533
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	395
MboII	GAAGA	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	3 cut(s)	116, 295, 360
MluNI	TGGCCA	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	3 cut(s)	234, 237, 414
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	2 cut(s)	137, 216
Msp20I	TGGCCA	1 cut(s)	260
MwoI	GCNNNNNNNGC	4 cut(s)	257, 431, 490, 521
NcoI	CCATGG	1 cut(s)	252
NlaIII	CATG	2 cut(s)	256, 394
NlaIV	GGNNCC	4 cut(s)	57, 304, 445, 494
NmuCI	GTSAC	1 cut(s)	395
NsbI	TGCGCA	1 cut(s)	125
PagI	TCATGA	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	91, 187
PkrI	GCNGC	3 cut(s)	480, 483, 523
PspN4I	GGNNCC	4 cut(s)	57, 304, 445, 494
PspPI	GGNCC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	137, 216
SatI	GCNGC	3 cut(s)	479, 482, 522
Sau96I	GGNCC	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	4 cut(s)	236, 415, 445, 517
SfaNI	GCATC	1 cut(s)	216
SfiI	GGCCNNNNNGGCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	3 cut(s)	116, 295, 360
SspMI	CTAG	1 cut(s)	453
StyI	CCWWGG	3 cut(s)	252, 326, 496
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	63, 321
TasI	AATT	3 cut(s)	116, 295, 360
TfiI	GAWTC	2 cut(s)	91, 187
Tru1I	TTAA	2 cut(s)	137, 216
Tru9I	TTAA	2 cut(s)	137, 216
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	3 cut(s)	478, 481, 521
Tsp45I	GTSAC	1 cut(s)	395
TspRI	CASTG	1 cut(s)	514
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.