Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0020427

Physical Location & Seq

Genomic Coordinates Forward (+)

9276388 .. 9277481

Gene Structure 1094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGACCATGGTGGCCACTGTCACTGCTCCCTATTTCCTCTTGGCTACTGATTACGGCTCCGAGCCCAACGCTCTCAACCCTTTCACTGATGTTGAAACGATGGTTTCTCCAACAATTTTTGCCGACCGCAGTTTGTCTTACCTTTTGAGTGACAAGCCTCAGGAAGCTCTCAACAATGCAATGCAAGCACAAGTAGTTTCCCAGTCTGGCACTTTGTATCTTATCTTTAGGCTGCTGCCCTTTCGGCCCCTTGGAATGGACAGTGAAGCTCAAGCAGCACTTGTTATGAACTCTGCGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

101

Amino Acids

10.88

Weight (kDa)

4.16

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	27 - 69	4.9e-13	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020427)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g08230 pycom01g08320 pycom01g08410 pycom01g08580 pycom01g08640 pycom01g08700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	127
AcoI	YGGCCR	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	2 cut(s)	167, 269
AluI	AGCT	2 cut(s)	167, 269
AoxI	GGCC	2 cut(s)	12, 245
ApeKI	GCWGC	3 cut(s)	232, 235, 275
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	246
AxyI	CCTNAGG	1 cut(s)	159
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	219, 222, 287
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	3 cut(s)	233, 236, 276
BlsI	GCNGC	3 cut(s)	234, 237, 277
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	58, 248
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	6, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	202
Bse21I	CCTNAGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	6, 250
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	3 cut(s)	219, 222, 287
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	14, 247
BsiEI	CGRYCG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	256
BsnI	GGCC	2 cut(s)	14, 247
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	2 cut(s)	14, 247
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	58, 248
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	6, 250
BssT1I	CCWWGG	2 cut(s)	6, 250
Bst4CI	ACNGT	2 cut(s)	19, 263
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 244, 275
BstV1I	GCAGC	3 cut(s)	219, 222, 287
Bsu36I	CCTNAGG	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	14, 247
BtgI	CCRYGG	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	15, 21, 84, 268
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	9 cut(s)	14, 44, 57, 64, 157, 167, 232, 247, 269
CviKI_1	RGCY	9 cut(s)	14, 44, 57, 64, 157, 167, 232, 247, 269
DdeI	CTNAG	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	6, 250
Eco24I	GRGCYC	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	6, 250
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	2 cut(s)	6, 250
FaeI	CATG	1 cut(s)	10
FaiI	YATR	2 cut(s)	8, 287
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	233, 236, 276
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	3 cut(s)	233, 236, 276
FspBI	CTAG	1 cut(s)	301
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	233, 236, 276
HaeIII	GGCC	2 cut(s)	14, 247
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	19, 263
HpyCH4V	TGCA	2 cut(s)	179, 184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 244, 275
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	296
LmnI	GCTCC	2 cut(s)	31, 62
LpnPI	CCDG	3 cut(s)	146, 192, 215
Lsp1109I	GCAGC	3 cut(s)	219, 222, 287
MaeI	CTAG	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	19, 149
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	114
MluNI	TGGCCA	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	2 cut(s)	47, 168
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	185, 244, 275
NcoI	CCATGG	1 cut(s)	6
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	2 cut(s)	58, 248
NmuCI	GTSAC	2 cut(s)	19, 149
PkrI	GCNGC	3 cut(s)	234, 237, 277
PspN4I	GGNNCC	2 cut(s)	58, 248
PspPI	GGNCC	1 cut(s)	246
SatI	GCNGC	3 cut(s)	233, 236, 276
Sau96I	GGNCC	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	3 cut(s)	144, 169, 271
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	1 cut(s)	301
StyI	CCWWGG	2 cut(s)	6, 250
TaaI	ACNGT	2 cut(s)	19, 263
TasI	AATT	1 cut(s)	114
TscAI	CASTG	4 cut(s)	22, 28, 91, 268
TseFI	GTSAC	2 cut(s)	19, 149
TseI	GCWGC	3 cut(s)	232, 235, 275
Tsp45I	GTSAC	2 cut(s)	19, 149
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	4 cut(s)	22, 28, 91, 268
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.