pycom01g08580

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
9530522 .. 9531750
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGAATTTGTTTGCCCTCTTACTTTTAGCCCCATTTTCAACCAAACAAAAAAAAATTCCAAAAAATCATTTCTCTCCCACTTTTCTCCTTTTCATATATTTCCATCTTGTGCTTTCTTCCCCTCCCAACAATGAAAAACCCACACTTAATCACTTTCTCCAAAGCCAACTCTCAAAAGTCTCCATCTTTAAACCCATTTTCTTTCCAGAGAATCCAAGCGAAAGCAAAAGCATCACGATTAACTCAAAAACCGAAGGGCTGGTGAGGAGGACAACCATGGTGGCCACTGTCATTGCTCCCTATTTCCTCTTGACTGCTGATTACCGCTCCAAGCCCAACGCTCTCGACCCTGTCTGCAATTTGAGCTCACAAATTTTGGGGTCTTTCCATTTCGGTTCATTGATGTTGAAACAATGGTTTCTCCAACAATTTTTGCCCGGCGTTGTTTGTCTTATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

9.78

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020427)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 327
AciI CCGC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 3 cut(s) 4, 54, 372
AgsI TTSAA 2 cut(s) 39, 409
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 1 cut(s) 184
AoxI GGCC 1 cut(s) 282
ApoI RAATTY 3 cut(s) 4, 54, 372
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 274
BalI TGGCCA 1 cut(s) 284
BanII GRGCYC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 368
BccI CCATC 2 cut(s) 111, 191
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 280
BshFI GGCC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 438
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 368
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 325
BspANI GGCC 1 cut(s) 284
BspHI TCATGA 1 cut(s) 458
BsrBI CCGCTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 436
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 285
CciI TCATGA 1 cut(s) 458
CspCI CAANNNNNGTGG 4 cut(s) 261, 274, 296, 309
CviAII CATG 2 cut(s) 277, 459
CviJI RGCY 6 cut(s) 29, 165, 259, 284, 334, 366
CviKI_1 RGCY 6 cut(s) 29, 165, 259, 284, 334, 366
DraI TTTAAA 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 280, 462
FaiI YATR 4 cut(s) 95, 97, 278, 460
FatI CATG 2 cut(s) 276, 458
FriOI GRGCYC 1 cut(s) 368
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 438
Hin1II CATG 2 cut(s) 280, 462
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 274
Hpy188III TCNNGA 5 cut(s) 206, 235, 310, 344, 459
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
Hsp92II CATG 2 cut(s) 280, 462
LmnI GCTCC 2 cut(s) 301, 332
LpnPI CCDG 4 cut(s) 219, 245, 363, 451
LweI GCATC 1 cut(s) 240
MbiI CCGCTC 1 cut(s) 327
MboII GAAGA 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 368
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 5 cut(s) 4, 54, 358, 372, 428
MluNI TGGCCA 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 5 cut(s) 26, 132, 258, 261, 317
Mox20I TGGCCA 1 cut(s) 284
MscI TGGCCA 1 cut(s) 284
MseI TTAA 3 cut(s) 147, 189, 240
Msp20I TGGCCA 1 cut(s) 284
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 363
NciI CCSGG 1 cut(s) 438
NcoI CCATGG 1 cut(s) 276
NlaIII CATG 2 cut(s) 280, 462
PagI TCATGA 1 cut(s) 458
PfeI GAWTC 1 cut(s) 211
PflFI GACNNNGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 368
PsyI GACNNNGTC 1 cut(s) 350
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 3 cut(s) 147, 189, 240
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 1 cut(s) 368
SetI ASST 1 cut(s) 368
SfaNI GCATC 1 cut(s) 240
Sse9I AATT 5 cut(s) 4, 54, 358, 372, 428
SsiI CCGC 1 cut(s) 325
SstI GAGCTC 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 345
TasI AATT 5 cut(s) 4, 54, 358, 372, 428
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 3 cut(s) 147, 189, 240
Tru9I TTAA 3 cut(s) 147, 189, 240
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 17, 82, 147, 387
TspRI CASTG 1 cut(s) 292
Tth111I GACNNNGTC 1 cut(s) 350
XapI RAATTY 3 cut(s) 4, 54, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.