Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0020427

Physical Location & Seq

Genomic Coordinates Forward (+)

9594820 .. 9596008

Gene Structure 1189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAATCAAAGCGAAAGCAAAATCATCACGATTAACTCAAAAGCCGAAAGGCCGGTGGGGAGGACGACCATGGTGGCCACAATCAATGCTCCCTATTTCCTCTTGACTGCTGATTATGGCTCCGAGCCCAACGCTCTCGACCCTTTCACTGATGTTGAAACGATGGTTTCTCCAACAATTTTTGCCAACCGTAGTTTGTCTTATCTTATGAGTGACAAGCCTCAGGAAGCTCTCAACAATGCAATGCAAGCACAAGTAGTTTCCCAGTGTGGCACTTTGCATCTTATCTTTAGGCTGCTGCCCTTTTGGCCCCTTGGAATGGACAGTGAAGCTCAAACAACACTCGTTATGAACTCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

121

Amino Acids

13.25

Weight (kDa)

4.72

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	49 - 89	1.3e-13	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020427)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g08230 pycom01g08320 pycom01g08410 pycom01g08580 pycom01g08640 pycom01g08700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	2 cut(s)	230, 332
AluI	AGCT	2 cut(s)	230, 332
AoxI	GGCC	3 cut(s)	50, 75, 308
ApeKI	GCWGC	2 cut(s)	295, 298
AspS9I	GGNCC	1 cut(s)	309
AxyI	CCTNAGG	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	282, 285
BccI	CCATC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	296, 299
BlsI	GCNGC	2 cut(s)	297, 300
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	121, 311
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	69, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	265
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	69, 313
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	282, 285
BshFI	GGCC	3 cut(s)	52, 77, 310
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	319
BsnI	GGCC	3 cut(s)	52, 77, 310
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	69
BspANI	GGCC	3 cut(s)	52, 77, 310
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	121, 311
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	69, 313
BssT1I	CCWWGG	2 cut(s)	69, 313
Bst4CI	ACNGT	2 cut(s)	191, 326
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 307
BstV1I	GCAGC	2 cut(s)	282, 285
Bsu36I	CCTNAGG	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	52, 77, 310
BtgI	CCRYGG	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	147, 272, 331
Cac8I	GCNNGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	309
CviAII	CATG	1 cut(s)	70
DdeI	CTNAG	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	69, 313
Eco24I	GRGCYC	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	222
EcoT14I	CCWWGG	2 cut(s)	69, 313
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	69, 313
FaeI	CATG	1 cut(s)	73
FaiI	YATR	4 cut(s)	71, 117, 209, 350
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	296, 299
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	296, 299
GluI	GCNGC	2 cut(s)	296, 299
HaeIII	GGCC	3 cut(s)	52, 77, 310
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	28, 103, 137, 224
HpyCH4III	ACNGT	2 cut(s)	191, 326
HpyCH4V	TGCA	3 cut(s)	242, 247, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 307
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	94, 125
LpnPI	CCDG	3 cut(s)	66, 209, 278
Lsp1109I	GCAGC	2 cut(s)	282, 285
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	54, 110, 231
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	248, 307
NcoI	CCATGG	1 cut(s)	69
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	121, 311
NmuCI	GTSAC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	297, 300
PspN4I	GGNNCC	2 cut(s)	121, 311
PspPI	GGNCC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	296, 299
Sau96I	GGNCC	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	2 cut(s)	232, 334
SfaNI	GCATC	1 cut(s)	289
Sse9I	AATT	1 cut(s)	177
StyI	CCWWGG	2 cut(s)	69, 313
TaaI	ACNGT	2 cut(s)	191, 326
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	3 cut(s)	154, 272, 331
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	295, 298
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	154, 272, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.