Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013895

Physical Location & Seq

Genomic Coordinates Forward (+)

10322598 .. 10326046

Gene Structure 3449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09410.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGATCGTGTAAACATGAGCATTGCAATACTTCCCATGTCACAGGAATTCAACTGGAATAGTGCAACAGTTGGCTTGATTCAGTCCTCCTTTTTCTGGGGTTACCTGCTTACTCAGATTCTTGGAGGCATTTTGGCAGATAAAATTGGTGGAAAGCGTGTATTGGGTTTTGGAGTGATCTGGTGGTCAGTAGCGACAATTTTGACACCTATTGCGGCAAAAATCAGCCTCCCTTTTTTGCTTATCATGCGTGCTTTCATGGGGATTGGTGAGGGTGTCGCTATGCCTGCTATGAATAATATACTCTCTAAGTGGATTCCAGTGTCTGAGAGAAGCAGAGCACTTTCACTAGTATATACTGGCATGTACCTTGGTTCTGTCACTGGGTTGGCCGTTTCTCCGATTCTAATCCAGAAGTTCAAATGGCCGTCTGTGTTTTACTCATTTGGCTCTCTTGGTAGTATCTGGTTGGCATTATGGCTGAATAAAGCATATAGCACACCAAAAGAAGATCCAGAGCTTAGCGCAGAGGAAAAAGAACTTATCATGGGTGGAACTGGAAACACATCTAAGGAGCCTGTTAAGGTCATTCCTTGGAAGCTAATATTATCAAAAACACCTGTTTGGGCTCTTATAGTCTGCCACTTTTGCCACAATTGGGGAACCTTTATTCTATTGACATGGATGCCTACATACTACAATCAGGTTCTGAAATTCAACCTCACTGAATCCGGGCTCCTCTGTGTCTTGCCATGGTTGACGATGGCTGTTTTTGCAAATATAGGAGGCTGGATTGCAGATACACTTGTCACCAAAGGTTTTTCTGTAACGACAGTTCGTAAGATCATGCAATCAATTGGGTTTCTGGGACCAGCCTTTTCCCTTACACTGCTGAGCCGTGTCAAGACACCCGCAATGGCAGTACTATGCATGGCATGCAGTCAGGGATCTGATGCATTCTCACAATCCGGTCTCTACTCCAACCACCAAGACATTGGACCTCGCTATGCTGGAGTATTGCTGGGACTCTCAAACACAGCAGGAGTTCTTGCTGGTGTTTTCGGTACAGCTGCAACAGGGTACATACTCCAACGAGGTTCTTGGGATGATGTATTCAAGGTCTCTGTTGTATTGTACATCATTGGCACATTAATCTGGAACTTGTTTTCAACTGGAGAGAAAATCCTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0010028 GO:0015075 GO:0015144 GO:0015145 GO:0015229 GO:0015291 GO:0015318 GO:0015711 GO:0015749 GO:0015849 GO:0015882 GO:0016020 GO:0016021 GO:0016108 GO:0016116 GO:0016122 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035461 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051119 GO:0051179 GO:0051180 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0090482 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

398

Amino Acids

43.41

Weight (kDa)

9.18

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00370
fragaria_vesca	FvH4_7g14470
malus_domestica	MD01G1064800.v1.1 MD07G1135600.v1.1
prunus_persica	Prupe.2G171700_v2.0.a1
pyrus_communis	pycom01g09410 pycom07g13280
rosa_chinensis	RchiOBHm_Chr1g0355881
rosa_laevigata	RLG00000028119
rosa_multiflora	Rmu_sc0004705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00299950
rosa_rugosa	Rorug01G0248100
rosa_samantha	Rh1AG261400 Rh1BG229900 Rh1CG244500 Rh1DG257900
rosa_wichuraiana	Rw1G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AciI	CCGC	2 cut(s)	215, 912
AclWI	GGATC	3 cut(s)	12, 506, 955
AcoI	YGGCCR	2 cut(s)	390, 425
AcsI	RAATTY	2 cut(s)	47, 713
AfaI	GTAC	5 cut(s)	368, 924, 1066, 1082, 1136
AfiI	CCNNNNNNNGG	2 cut(s)	96, 658
AgsI	TTSAA	5 cut(s)	52, 421, 718, 1117, 1170
AhlI	ACTAGT	1 cut(s)	349
AluBI	AGCT	3 cut(s)	520, 601, 1070
AluI	AGCT	3 cut(s)	520, 601, 1070
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	977, 1126
AlwI	GGATC	3 cut(s)	12, 506, 955
AlwNI	CAGNNNCTG	2 cut(s)	326, 709
AoxI	GGCC	2 cut(s)	390, 425
ApeKI	GCWGC	1 cut(s)	1070
ApoI	RAATTY	2 cut(s)	47, 713
AseI	ATTAAT	1 cut(s)	1151
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	869, 998
AsuC2I	CCSGG	1 cut(s)	733
AsuHPI	GGTGA	2 cut(s)	281, 802
AvaII	GGWCC	2 cut(s)	869, 998
BaeI	ACNNNNGTAYC	2 cut(s)	792, 825
BanII	GRGCYC	2 cut(s)	631, 738
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	1057
BccI	CCATC	1 cut(s)	757
BceAI	ACGGC	3 cut(s)	377, 412, 882
BcnI	CCSGG	1 cut(s)	733
BcoDI	GTCTC	2 cut(s)	977, 1126
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	2 cut(s)	350, 1192
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	216, 1071
BlpI	GCTNAGC	2 cut(s)	521, 893
BlsI	GCNGC	2 cut(s)	217, 1072
BmcAI	AGTACT	1 cut(s)	924
Bme1390I	CCNGG	1 cut(s)	733
Bme18I	GGWCC	2 cut(s)	869, 998
BmgT120I	GGNCC	2 cut(s)	869, 998
BmiI	GGNNCC	4 cut(s)	576, 664, 737, 870
BmrFI	CCNGG	1 cut(s)	733
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	675, 943
BmuI	ACTGGG	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	1032, 1194
Bpu1102I	GCTNAGC	2 cut(s)	521, 893
BpuMI	CCSGG	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	407
BsaI	GGTCTC	2 cut(s)	977, 1126
BsaJI	CCNNGG	3 cut(s)	370, 593, 752
BsaWI	WCCGGW	1 cut(s)	968
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 658
Bse1I	ACTGG	6 cut(s)	59, 320, 364, 388, 562, 1177
Bse3DI	GCAATG	2 cut(s)	21, 921
Bse8I	GATNNNNATC	1 cut(s)	407
BseDI	CCNNGG	3 cut(s)	370, 593, 752
BseGI	GGATG	2 cut(s)	690, 1111
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	96, 658
BseMI	GCAATG	2 cut(s)	21, 921
BseMII	CTCAG	3 cut(s)	128, 318, 884
BseNI	ACTGG	6 cut(s)	59, 320, 364, 388, 562, 1177
BseRI	GAGGAG	1 cut(s)	728
BseXI	GCAGC	1 cut(s)	1057
BseYI	CCCAGC	1 cut(s)	1021
BshFI	GGCC	2 cut(s)	392, 427
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	732, 969
BslFI	GGGAC	2 cut(s)	882, 1038
BslI	CCNNNNNNNGG	2 cut(s)	96, 658
BsmAI	GTCTC	2 cut(s)	977, 1126
BsmFI	GGGAC	2 cut(s)	882, 1038
BsmI	GAATGC	1 cut(s)	956
BsnI	GGCC	2 cut(s)	392, 427
Bso31I	GGTCTC	2 cut(s)	977, 1126
Bsp1286I	GDGCHC	3 cut(s)	343, 631, 738
Bsp1407I	TGTACA	1 cut(s)	1134
Bsp143I	GATC	5 cut(s)	4, 177, 511, 843, 947
Bsp1720I	GCTNAGC	2 cut(s)	521, 893
Bsp19I	CCATGG	1 cut(s)	752
BspACI	CCGC	2 cut(s)	215, 912
BspANI	GGCC	2 cut(s)	392, 427
BspCNI	CTCAG	3 cut(s)	127, 319, 885
BspLI	GGNNCC	4 cut(s)	576, 664, 737, 870
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	3 cut(s)	12, 506, 955
BspTNI	GGTCTC	2 cut(s)	977, 1126
BsrDI	GCAATG	2 cut(s)	21, 921
BsrGI	TGTACA	1 cut(s)	1134
BsrI	ACTGG	6 cut(s)	59, 320, 364, 388, 562, 1177
BssECI	CCNNGG	3 cut(s)	370, 593, 752
BssMI	GATC	5 cut(s)	4, 177, 511, 843, 947
BssT1I	CCWWGG	3 cut(s)	370, 593, 752
Bst4CI	ACNGT	2 cut(s)	70, 835
BstAPI	GCANNNNNTGC	1 cut(s)	936
BstAUI	TGTACA	1 cut(s)	1134
BstC8I	GCNNGC	3 cut(s)	252, 288, 937
BstDEI	CTNAG	6 cut(s)	114, 309, 327, 521, 570, 893
BstDSI	CCRYGG	1 cut(s)	752
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	690, 1111
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	5 cut(s)	7, 180, 514, 846, 950
BstMAI	GTCTC	2 cut(s)	977, 1126
BstMBI	GATC	5 cut(s)	4, 177, 511, 843, 947
BstMWI	GCNNNNNNNGC	5 cut(s)	247, 287, 648, 773, 936
BstNSI	RCATGY	2 cut(s)	367, 939
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	731
BstV1I	GCAGC	1 cut(s)	1057
BstX2I	RGATCY	2 cut(s)	511, 947
BstXI	CCANNNNNNTGG	1 cut(s)	995
BstYI	RGATCY	2 cut(s)	511, 947
BsuRI	GGCC	2 cut(s)	392, 427
BtgI	CCRYGG	1 cut(s)	752
BtsCI	GGATG	2 cut(s)	690, 1111
BtsI	GCAGTG	1 cut(s)	887
BtsIMutI	CAGTG	4 cut(s)	327, 381, 723, 887
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	3 cut(s)	252, 288, 937
CaiI	CAGNNNCTG	2 cut(s)	326, 709
CfoI	GCGC	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	869, 998
Csp6I	GTAC	5 cut(s)	367, 923, 1065, 1081, 1135
CviQI	GTAC	5 cut(s)	367, 923, 1065, 1081, 1135
DdeI	CTNAG	6 cut(s)	114, 309, 327, 521, 570, 893
DpnI	GATC	5 cut(s)	6, 179, 513, 845, 949
DpnII	GATC	5 cut(s)	4, 177, 511, 843, 947
EaeI	YGGCCR	2 cut(s)	390, 425
Eco130I	CCWWGG	3 cut(s)	370, 593, 752
Eco24I	GRGCYC	2 cut(s)	631, 738
Eco31I	GGTCTC	2 cut(s)	977, 1126
Eco47I	GGWCC	2 cut(s)	869, 998
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	47
EcoT14I	CCWWGG	3 cut(s)	370, 593, 752
EcoT22I	ATGCAT	2 cut(s)	932, 958
EcoT38I	GRGCYC	2 cut(s)	631, 738
ErhI	CCWWGG	3 cut(s)	370, 593, 752
FaqI	GGGAC	2 cut(s)	882, 1038
FauI	CCCGC	1 cut(s)	919
Fnu4HI	GCNGC	2 cut(s)	216, 1071
FokI	GGATG	2 cut(s)	697, 1118
FriOI	GRGCYC	2 cut(s)	631, 738
Fsp4HI	GCNGC	2 cut(s)	216, 1071
FspBI	CTAG	2 cut(s)	350, 1192
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	2 cut(s)	216, 1071
GsaI	CCCAGC	1 cut(s)	1025
GsuI	CTGGAG	2 cut(s)	1032, 1194
HaeIII	GGCC	2 cut(s)	392, 427
HapII	CCGG	2 cut(s)	732, 969
HhaI	GCGC	1 cut(s)	527
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HinfI	GANTC	6 cut(s)	79, 118, 316, 403, 728, 1026
HpaII	CCGG	2 cut(s)	732, 969
HphI	GGTGA	2 cut(s)	281, 802
Hpy166II	GTNNAC	2 cut(s)	13, 759
Hpy188I	TCNGA	5 cut(s)	117, 328, 402, 711, 952
Hpy188III	TCNNGA	4 cut(s)	412, 515, 904, 1156
Hpy8I	GTNNAC	2 cut(s)	13, 759
HpyCH4III	ACNGT	2 cut(s)	70, 835
HpyCH4V	TGCA	9 cut(s)	26, 65, 776, 797, 850, 930, 939, 956, 1073
HpyF10VI	GCNNNNNNNGC	5 cut(s)	247, 287, 648, 773, 936
HpyF3I	CTNAG	6 cut(s)	114, 309, 327, 521, 570, 893
HspAI	GCGC	1 cut(s)	525
Kzo9I	GATC	5 cut(s)	4, 177, 511, 843, 947
LmnI	GCTCC	2 cut(s)	574, 741
Lsp1109I	GCAGC	1 cut(s)	1057
LweI	GCATC	2 cut(s)	675, 943
MaeI	CTAG	2 cut(s)	350, 1192
MaeIII	GTNAC	5 cut(s)	39, 101, 379, 808, 826
MalI	GATC	5 cut(s)	6, 179, 513, 845, 949
MboI	GATC	5 cut(s)	4, 177, 511, 843, 947
MboII	GAAGA	1 cut(s)	521
MfeI	CAATTG	2 cut(s)	655, 855
MflI	RGATCY	2 cut(s)	511, 947
MhlI	GDGCHC	3 cut(s)	343, 631, 738
MluCI	AATT	6 cut(s)	47, 144, 198, 655, 713, 855
MlyI	GAGTC	1 cut(s)	1020
MmeI	TCCRAC	2 cut(s)	1005, 1114
Mph1103I	ATGCAT	2 cut(s)	932, 958
MseI	TTAA	2 cut(s)	582, 1151
MspA1I	CMGCKG	1 cut(s)	1070
MspI	CCGG	2 cut(s)	732, 969
MspR9I	CCNGG	1 cut(s)	733
MunI	CAATTG	2 cut(s)	655, 855
Mva1269I	GAATGC	1 cut(s)	956
MwoI	GCNNNNNNNGC	5 cut(s)	247, 287, 648, 773, 936
NciI	CCSGG	1 cut(s)	733
NcoI	CCATGG	1 cut(s)	752
NdeII	GATC	5 cut(s)	4, 177, 511, 843, 947
NlaIV	GGNNCC	4 cut(s)	576, 664, 737, 870
NmuCI	GTSAC	3 cut(s)	39, 379, 808
NsiI	ATGCAT	2 cut(s)	932, 958
NspI	RCATGY	2 cut(s)	367, 939
PaeI	GCATGC	1 cut(s)	939
PctI	GAATGC	1 cut(s)	956
PfeI	GAWTC	5 cut(s)	79, 118, 316, 403, 728
PkrI	GCNGC	2 cut(s)	217, 1072
PleI	GAGTC	1 cut(s)	1020
PpsI	GAGTC	1 cut(s)	1020
PshBI	ATTAAT	1 cut(s)	1151
PspEI	GGTNACC	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	1021
PspN4I	GGNNCC	4 cut(s)	576, 664, 737, 870
PspPI	GGNCC	2 cut(s)	869, 998
PsrI	GAACNNNNNNTAC	2 cut(s)	819, 851
PstNI	CAGNNNCTG	2 cut(s)	326, 709
PsuI	RGATCY	2 cut(s)	511, 947
PvuII	CAGCTG	1 cut(s)	1070
RsaI	GTAC	5 cut(s)	368, 924, 1066, 1082, 1136
RsaNI	GTAC	5 cut(s)	367, 923, 1065, 1081, 1135
SaqAI	TTAA	2 cut(s)	582, 1151
SatI	GCNGC	2 cut(s)	216, 1071
Sau3AI	GATC	5 cut(s)	4, 177, 511, 843, 947
Sau96I	GGNCC	2 cut(s)	869, 998
ScaI	AGTACT	1 cut(s)	924
SchI	GAGTC	1 cut(s)	1020
ScrFI	CCNGG	1 cut(s)	733
SduI	GDGCHC	3 cut(s)	343, 631, 738
SfaNI	GCATC	2 cut(s)	675, 943
SinI	GGWCC	2 cut(s)	869, 998
SpeI	ACTAGT	1 cut(s)	349
SphI	GCATGC	1 cut(s)	939
Sse9I	AATT	6 cut(s)	47, 144, 198, 655, 713, 855
SsiI	CCGC	2 cut(s)	215, 912
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	2 cut(s)	350, 1192
StyD4I	CCNGG	1 cut(s)	731
StyI	CCWWGG	3 cut(s)	370, 593, 752
TaaI	ACNGT	2 cut(s)	70, 835
TaqI	TCGA	1 cut(s)	1188
TasI	AATT	6 cut(s)	47, 144, 198, 655, 713, 855
TatI	WGTACW	2 cut(s)	922, 1134
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	5 cut(s)	79, 118, 316, 403, 728
Tru1I	TTAA	2 cut(s)	582, 1151
Tru9I	TTAA	2 cut(s)	582, 1151
TscAI	CASTG	4 cut(s)	327, 388, 730, 894
TseFI	GTSAC	3 cut(s)	39, 379, 808
TseI	GCWGC	1 cut(s)	1070
Tsp45I	GTSAC	3 cut(s)	39, 379, 808
TspDTI	ATGAA	2 cut(s)	247, 308
TspRI	CASTG	4 cut(s)	327, 388, 730, 894
VpaK11BI	GGWCC	2 cut(s)	869, 998
VspI	ATTAAT	1 cut(s)	1151
XapI	RAATTY	2 cut(s)	47, 713
XceI	RCATGY	2 cut(s)	367, 939
XcmI	CCANNNNNNNNNTGG	1 cut(s)	992
XspI	CTAG	2 cut(s)	350, 1192
ZrmI	AGTACT	1 cut(s)	924
Zsp2I	ATGCAT	2 cut(s)	932, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.